Detailed information of deep learning profile BP001108.1

This page shows detailed deep learning-derived predictions and motifs for GABPA in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GABPA
Model ID: BP001108.1
Cell line/tissue: A549
Class: Tryptophan cluster factors
Family: Ets-related
Best Match(es): MA0062.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q06546  
Source: ENCSR000BPY
Model: BPNet

Contribution weight matrix (CWM)

A [ -2.20e-04 8.19e-05 -3.81e-06 -1.32e-05 6.70e-02 5.14e-02 1.31e-03 -9.54e-04 ]
C [ 2.58e-02 5.65e-02 1.56e-05 1.71e-05 1.58e-04 1.02e-04 4.57e-04 3.41e-03 ]
G [ 8.49e-04 4.81e-05 9.17e-02 7.33e-02 8.45e-05 1.06e-04 1.96e-02 -3.95e-04 ]
T [ -3.86e-04 -1.28e-04 6.90e-06 2.57e-05 -6.56e-06 -4.18e-06 -1.09e-04 1.52e-02 ]

Frequency matrix

A [ 8549 14381 11 875 48265 47617 14924 8986 ]
C [ 31606 42639 37 738 3768 4747 10878 18123 ]
G [ 17159 4000 61645 59327 6967 4008 29832 12090 ]
T [ 4391 686 13 766 2706 5334 6072 22507 ]

13 profiles found for the same TF (GABPA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000840.1 GABPA ENCSR038GMB liver Homo sapiens
BP000852.1 GABPA ENCSR290MUH K562 Homo sapiens
BP001058.1 GABPA ENCSR000BHS HeLa-S3 Homo sapiens
Showing 3 profiles of page 2 from 2 pages