Detailed information of deep learning profile BP001108.1

This page shows detailed deep learning-derived predictions and motifs for GABPA in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: GABPA
Model ID: BP001108.1
Cell line/tissue: A549
Class: Tryptophan cluster factors
Family: Ets-related
Best Match(es): MA0062.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q06546  
Source: ENCSR000BPY
Model: BPNet

Contribution weight matrix (CWM)

A [ 1.52e-02 -1.09e-04 -4.18e-06 -6.56e-06 2.57e-05 6.90e-06 -1.28e-04 -3.86e-04 ]
C [ -3.95e-04 1.96e-02 1.06e-04 8.45e-05 7.33e-02 9.17e-02 4.81e-05 8.49e-04 ]
G [ 3.41e-03 4.57e-04 1.02e-04 1.58e-04 1.71e-05 1.56e-05 5.65e-02 2.58e-02 ]
T [ -9.54e-04 1.31e-03 5.14e-02 6.70e-02 -1.32e-05 -3.81e-06 8.19e-05 -2.20e-04 ]

Frequency matrix

A [ 22507 6072 5334 2706 766 13 686 4391 ]
C [ 12090 29832 4008 6967 59327 61645 4000 17159 ]
G [ 18123 10878 4747 3768 738 37 42639 31606 ]
T [ 8986 14924 47617 48265 875 11 14381 8549 ]

13 profiles found for the same TF (GABPA) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000192.1 GABPA ENCSR000BIW H1 Homo sapiens
BP000204.1 GABPA ENCSR350ORK liver Homo sapiens
BP000323.1 GABPA ENCSR269TNX HepG2 Homo sapiens
BP000347.1 GABPA ENCSR331HPA GM12878 Homo sapiens
BP000391.1 GABPA ENCSR038RXU MCF-7 Homo sapiens
BP000406.1 GABPA ENCSR000BTG SK-N-SH Homo sapiens
BP000563.1 GABPA ENCSR000BLO K562 Homo sapiens
BP000582.1 GABPA ENCSR000BUK MCF-7 Homo sapiens
BP000699.1 GABPA ENCSR000BTK HL-60 Homo sapiens
BP000823.1 GABPA ENCSR000BJK HepG2 Homo sapiens
Showing 10 profiles of page 1 from 2 pages