This page shows detailed deep learning-derived predictions and motifs for CTCF in LNCAP using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.
Model details
| Name: | CTCF |
| Model ID: | BP001113.1 |
| Cell line/tissue: | LNCAP |
| Class: | C2H2 zinc finger factors |
| Family: | More than 3 adjacent zinc fingers |
| Best Match(es): | MA0139.2 |
| Taxon: | Vertebrates |
| Species: | Homo sapiens |
| Data Type: | ChIP-seq |
| Uniprot ID: | P49711 |
| Source: | ENCSR315NAC |
| Model: | BPNet |
| A [ | -9.73e-04 | -3.04e-03 | -2.65e-03 | 9.24e-05 | -4.67e-04 | 6.78e-03 | -5.05e-04 | -2.75e-04 | -2.09e-03 | 1.70e-02 | -2.07e-03 | -5.41e-03 | -5.48e-04 | -3.02e-03 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 1.16e-02 | 5.21e-02 | -8.02e-04 | 1.03e-01 | 1.49e-01 | 4.59e-02 | 6.19e-02 | 1.62e-01 | 4.20e-04 | -2.02e-03 | 1.22e-02 | 5.09e-03 | -2.85e-04 | -1.66e-03 | ] |
| G [ | 3.15e-02 | -8.67e-04 | 8.64e-02 | -3.16e-04 | -4.70e-05 | -3.96e-04 | -1.80e-04 | -9.28e-05 | -2.62e-04 | 1.39e-02 | 5.19e-02 | -3.13e-04 | 1.60e-01 | 8.06e-02 | ] |
| T [ | -3.30e-03 | 9.02e-03 | -3.31e-03 | -1.23e-03 | -7.43e-04 | -4.27e-03 | 1.74e-02 | -3.86e-04 | 6.75e-02 | -4.42e-03 | -1.95e-03 | 2.49e-02 | -6.16e-04 | -1.70e-03 | ] |
| A [ | 4156 | 2167 | 3605 | 3159 | 395 | 16760 | 332 | 201 | 2590 | 15222 | 1448 | 6165 | 3 | 3150 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 13056 | 20303 | 908 | 38050 | 41559 | 21639 | 25240 | 42025 | 3166 | 3465 | 15953 | 4969 | 2 | 2723 | ] |
| G [ | 21140 | 1739 | 32315 | 739 | 112 | 1519 | 264 | 56 | 1106 | 17095 | 22415 | 1641 | 42606 | 32401 | ] |
| T [ | 4265 | 18409 | 5790 | 670 | 552 | 2700 | 16782 | 336 | 35756 | 6836 | 2802 | 29843 | 7 | 4344 | ] |
