Detailed information of deep learning profile BP001115.1

This page shows detailed deep learning-derived predictions and motifs for FOXA2 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: FOXA2
Model ID: BP001115.1
Cell line/tissue: A549
Class: Fork head/winged helix factors
Family: FOX
Best Match(es): MA0047.3 MA0032.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q9Y261  
Source: ENCSR000BRE
Model: BPNet

Contribution weight matrix (CWM)

A [ 6.08e-03 1.63e-02 8.45e-03 3.34e-03 -1.30e-04 8.24e-02 7.69e-02 1.11e-01 5.49e-06 7.91e-02 ]
C [ -4.71e-04 -1.61e-03 -1.72e-04 -1.51e-04 1.23e-02 6.59e-03 1.68e-03 1.65e-06 1.04e-01 -1.27e-04 ]
G [ -8.90e-04 1.11e-02 -1.75e-03 6.50e-02 2.37e-05 2.09e-06 2.29e-06 -1.28e-05 -1.02e-06 -1.84e-05 ]
T [ 2.13e-02 -1.58e-03 1.44e-02 -1.84e-04 8.23e-02 -2.00e-05 -7.39e-05 2.72e-07 7.07e-05 -4.95e-04 ]

Frequency matrix

A [ 23078 25008 23400 12108 1384 47133 49264 56899 0 53023 ]
C [ 6674 8620 2450 1996 15647 9159 6844 86 57613 789 ]
G [ 4904 16268 10736 39398 473 562 751 363 2 948 ]
T [ 22980 7740 21050 4133 40131 782 777 288 21 2876 ]

5 profiles found for the same TF (FOXA2) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000298.1 FOXA2 ENCSR066EBK HepG2 Homo sapiens
BP000704.1 FOXA2 ENCSR310NYI liver Homo sapiens
BP000787.1 FOXA2 ENCSR080XEY liver Homo sapiens
BP000906.1 FOXA2 ENCSR000BNI HepG2 Homo sapiens
BP001055.1 FOXA2 ENCSR490AMH HepG2 Homo sapiens
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