Detailed information of deep learning profile BP001116.1

This page shows detailed deep learning-derived predictions and motifs for PBX3 in SK-N-SH using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: PBX3
Model ID: BP001116.1
Cell line/tissue: SK-N-SH
Class: Homeo domain factors
Family: TALE-type homeo domain factors
Best Match(es): MA1114.1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P40426  
Source: ENCSR000BVE
Model: BPNet

Contribution weight matrix (CWM)

A [ 2.33e-04 -2.27e-05 3.57e-05 -1.10e-05 0.00e+00 3.94e-02 1.40e-02 1.08e-05 -1.76e-05 2.88e-02 ]
C [ 1.48e-02 2.13e-03 -1.37e-05 5.07e-03 5.89e-02 -6.17e-04 -6.36e-04 6.89e-06 4.21e-02 -4.66e-04 ]
G [ -6.75e-04 -1.15e-05 4.51e-02 -3.49e-05 4.88e-05 -7.91e-06 1.34e-03 1.07e-05 7.50e-06 -2.56e-05 ]
T [ -1.71e-04 2.58e-02 -1.90e-05 3.72e-02 0.00e+00 -1.62e-05 -2.35e-04 6.37e-02 6.44e-05 -3.18e-05 ]

Frequency matrix

A [ 2016 1148 193 276 41 9636 3732 161 271 7750 ]
C [ 6557 1380 54 2565 11384 795 3228 163 10061 1029 ]
G [ 1386 109 11024 317 11 236 2856 215 405 375 ]
T [ 1509 8830 196 8309 31 800 1652 10928 731 2313 ]

2 profiles found for the same TF (PBX3) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000227.1 PBX3 ENCSR865HXK HEK293 Homo sapiens
BP000721.1 PBX3 ENCSR000BGR GM12878 Homo sapiens
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