This page shows detailed deep learning-derived predictions and motifs for CTCF in SK-N-SH using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.
Model details
| Name: | CTCF |
| Model ID: | BP001130.1 |
| Cell line/tissue: | SK-N-SH |
| Class: | C2H2 zinc finger factors |
| Family: | More than 3 adjacent zinc fingers |
| Best Match(es): | MA0139.2 |
| Taxon: | Vertebrates |
| Species: | Homo sapiens |
| Data Type: | ChIP-seq |
| Uniprot ID: | P49711 |
| Source: | ENCSR000BLX |
| Model: | BPNet |
| A [ | -1.18e-03 | -4.20e-03 | -3.73e-03 | -4.88e-04 | -6.69e-04 | 7.60e-03 | -7.21e-04 | -3.40e-04 | -2.43e-03 | 1.99e-02 | -2.26e-03 | -5.74e-03 | -8.44e-04 | -3.04e-03 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 1.19e-02 | 6.45e-02 | -3.78e-04 | 1.25e-01 | 1.87e-01 | 5.92e-02 | 8.26e-02 | 1.94e-01 | 1.02e-03 | -2.21e-03 | 1.35e-02 | 5.88e-03 | -5.90e-04 | -2.19e-03 | ] |
| G [ | 4.04e-02 | -1.95e-04 | 1.03e-01 | 5.85e-04 | -6.71e-05 | -3.96e-04 | -1.88e-04 | -8.47e-05 | -3.11e-04 | 1.61e-02 | 5.73e-02 | 1.68e-04 | 1.84e-01 | 9.29e-02 | ] |
| T [ | -3.62e-03 | 7.75e-03 | -4.76e-03 | -1.82e-03 | -9.92e-04 | -5.24e-03 | 1.63e-02 | -4.78e-04 | 7.37e-02 | -5.42e-03 | -1.71e-03 | 2.69e-02 | -1.22e-03 | -2.20e-03 | ] |
| A [ | 5476 | 2830 | 4532 | 4184 | 544 | 17272 | 566 | 346 | 3759 | 18364 | 1951 | 7941 | 295 | 3526 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 14443 | 25659 | 1972 | 43215 | 49747 | 28486 | 31622 | 50188 | 5077 | 4832 | 18191 | 6815 | 396 | 3905 | ] |
| G [ | 26284 | 3196 | 36929 | 2416 | 213 | 1938 | 496 | 142 | 1726 | 19842 | 27693 | 2904 | 49873 | 38750 | ] |
| T [ | 5072 | 19589 | 7843 | 1460 | 771 | 3579 | 18590 | 599 | 40713 | 8237 | 3440 | 33616 | 711 | 5094 | ] |
