Detailed information of deep learning profile BP001141.1

This page shows detailed deep learning-derived predictions and motifs for REST in GM23338 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: REST
Model ID: BP001141.1
Cell line/tissue: GM23338
Class: C2H2 zinc finger factors
Family: Factors with multiple dispersed zinc fingers
Best Match(es): MA0138.3 MA0138.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q13127  
Source: ENCSR871KYB
Model: BPNet

Contribution weight matrix (CWM)

A [ -8.68e-04 -2.97e-04 -6.52e-04 -1.40e-05 -3.60e-05 1.05e-01 -5.43e-05 1.25e-01 5.45e-07 -1.62e-03 5.97e-04 -5.60e-04 -4.89e-04 ]
C [ 3.54e-03 2.45e-02 1.92e-03 2.53e-05 -2.37e-07 3.05e-04 1.10e-01 1.53e-05 5.40e-05 7.33e-02 8.12e-05 5.55e-02 5.86e-02 ]
G [ 3.30e-02 1.37e-03 -5.98e-04 1.46e-01 1.35e-01 1.00e-04 6.31e-05 4.77e-05 1.53e-01 -4.14e-04 2.12e-02 9.95e-04 -2.25e-04 ]
T [ -2.04e-03 8.23e-04 4.74e-02 1.16e-05 1.61e-04 3.63e-04 -7.75e-05 1.41e-04 -6.52e-06 2.99e-04 1.79e-02 -6.23e-04 3.72e-04 ]

Frequency matrix

A [ 494 1147 513 30 117 3986 24 4271 27 486 840 533 311 ]
C [ 2057 1449 536 18 7 179 3853 22 5 3110 100 2871 3311 ]
G [ 1222 716 412 4272 4185 36 347 11 4288 229 1590 720 128 ]
T [ 557 1018 2869 10 21 129 106 26 10 505 1800 206 580 ]

Alternative motif patterns (AMPs)

28 profiles found for the same TF (REST) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000383.1 REST ENCSR867WPH liver Homo sapiens
BP000442.1 REST ENCSR000BJJ SK-N-SH Homo sapiens
BP000459.1 REST ENCSR000BMN HeLa-S3 Homo sapiens
BP000564.1 REST ENCSR000BQP A549 Homo sapiens
BP000696.1 REST ENCSR000BJP PFSK-1 Homo sapiens
BP000728.1 REST ENCSR663WAR H1 Homo sapiens
BP000790.1 REST ENCSR000BTF HL-60 Homo sapiens
BP000875.1 REST ENCSR000BOZ SK-N-SH Homo sapiens
Showing 8 profiles of page 3 from 3 pages