This page shows detailed deep learning-derived predictions and motifs for CTCF in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.
Model details
| Name: | CTCF |
| Model ID: | BP001182.1 |
| Cell line/tissue: | GM12878 |
| Class: | C2H2 zinc finger factors |
| Family: | More than 3 adjacent zinc fingers |
| Best Match(es): | MA0139.2 |
| Taxon: | Vertebrates |
| Species: | Homo sapiens |
| Data Type: | ChIP-seq |
| Uniprot ID: | P49711 |
| Source: | ENCSR000DKV |
| Model: | BPNet |
| A [ | -9.46e-04 | -4.10e-03 | -3.25e-03 | -5.23e-04 | -8.12e-04 | 7.00e-03 | -7.14e-04 | -5.46e-04 | -2.16e-03 | 1.87e-02 | -2.40e-03 | -6.59e-03 | -1.02e-03 | -3.18e-03 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 9.81e-03 | 6.01e-02 | -4.46e-04 | 1.16e-01 | 1.79e-01 | 5.68e-02 | 8.86e-02 | 1.78e-01 | 1.18e-03 | -2.27e-03 | 9.73e-03 | 5.65e-03 | -6.23e-04 | -1.81e-03 | ] |
| G [ | 3.66e-02 | -1.20e-04 | 9.34e-02 | 8.07e-04 | -7.46e-05 | -4.04e-04 | -2.80e-04 | -1.39e-04 | -4.98e-04 | 1.40e-02 | 5.23e-02 | 9.26e-04 | 1.69e-01 | 8.48e-02 | ] |
| T [ | -3.09e-03 | 7.17e-03 | -5.59e-03 | -2.26e-03 | -1.13e-03 | -6.01e-03 | 1.31e-02 | -4.49e-04 | 6.52e-02 | -5.20e-03 | -1.80e-03 | 2.22e-02 | -1.61e-03 | -2.22e-03 | ] |
| A [ | 7455 | 3827 | 5991 | 5458 | 811 | 21326 | 773 | 582 | 5387 | 22495 | 2705 | 10738 | 461 | 4608 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 17605 | 31511 | 2988 | 52158 | 61146 | 34622 | 40977 | 61524 | 6711 | 6539 | 22384 | 8592 | 624 | 4990 | ] |
| G [ | 31813 | 4512 | 44466 | 3520 | 353 | 2571 | 523 | 236 | 2304 | 23839 | 33407 | 4354 | 60958 | 47149 | ] |
| T [ | 6366 | 23390 | 9796 | 2104 | 930 | 4721 | 20967 | 898 | 48839 | 10368 | 4743 | 39556 | 1197 | 6492 | ] |
