Detailed information of deep learning profile BP001240.1

This page shows detailed deep learning-derived predictions and motifs for PITX1 in HepG2 using a single trained BPNet model.

Model details

Name: PITX1
Model ID: BP001240.1
Cell line/tissue: HepG2
Class: Homeo domain factors
Family: Paired-related HD factors
Best Match(es): MA0682.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P78337  
Source: ENCSR374MAS
Model: BPNet

Contribution weight matrix (CWM)

A [ -5.29e-04 -8.30e-04 -3.00e-05 2.96e-02 3.96e-02 2.13e-05 0.00e+00 -3.17e-05 -6.96e-04 -9.25e-04 -6.46e-04 -3.42e-04 -8.96e-04 ]
C [ 9.73e-05 2.93e-03 -7.24e-07 5.70e-06 0.00e+00 4.42e-05 3.49e-02 1.98e-02 5.75e-03 1.14e-03 1.41e-03 1.27e-03 2.29e-03 ]
G [ 6.04e-03 2.10e-04 0.00e+00 2.96e-05 0.00e+00 1.24e-04 0.00e+00 1.07e-05 4.47e-04 7.06e-04 1.50e-03 2.77e-03 3.59e-03 ]
T [ -8.20e-04 4.92e-03 3.15e-02 2.29e-05 0.00e+00 1.81e-02 -4.25e-06 -2.07e-04 -4.79e-04 2.12e-03 -2.10e-04 -9.33e-04 -6.55e-04 ]

Frequency matrix

A [ 6278 4764 1935 32274 36330 5209 140 4519 5191 10949 7664 7432 10666 ]
C [ 6340 9062 324 191 5 3826 35624 23848 17211 8294 7544 13284 9298 ]
G [ 11002 9430 56 1842 34 5329 257 684 4387 5905 13330 8653 8530 ]
T [ 12752 13116 34057 2065 3 22008 351 7321 9583 11224 7833 7002 7877 ]