Summary information of deep learning profile DL0003.1

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This page shows the summary of all deep learning-derived profiles and motifs for ATF3. Please scroll down the page to browse individual datasets.

Profile summary

Name: ATF3
Profile ID: DL0003.1
Class: Basic leucine zipper factors (bZIP)
Family: Fos-related
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18847  
Source: ENCODE
Number of Datasets: 8
Models: BPNet

Sequence logo

Contribution weight matrix (CWM)

 
A [ -6.84e-04 1.89e-02 4.31e-06 1.15e-06 6.10e-02 -1.35e-04 -1.36e-05 4.29e-04 5.90e-02 6.08e-02 -5.20e-04 ]
C [ -1.99e-04 1.81e-04 1.50e-06 2.74e-05 4.71e-06 6.95e-03 -5.94e-06 3.43e-02 3.11e-04 -9.80e-06 5.90e-03 ]
G [ 1.33e-02 7.21e-03 5.73e-07 6.56e-02 1.53e-05 -3.47e-04 7.61e-02 -8.36e-06 1.78e-05 -4.09e-05 -8.54e-05 ]
T [ -7.58e-04 -8.18e-05 7.83e-02 2.64e-04 4.64e-05 2.48e-02 2.03e-04 3.74e-03 -1.27e-05 4.39e-05 1.77e-02 ]

Frequency matrix

       
A [ 21938 38927 117 276 64159 1667 544 17447 68461 68288 3528 ]
C [ 8443 10203 198 316 907 9167 748 39826 1404 469 17309 ]
G [ 28639 20261 44 67078 1880 5803 68831 393 346 981 10682 ]
T [ 11646 1276 70307 2996 3720 54030 543 13000 455 928 39147 ]

Alternative motif patterns (AMPs)

AMP ID: MO000010.1

Best match: UN0799.1

CWM

 
A [ 1.21e-02 -4.22e-06 2.45e-05 5.37e-02 -5.07e-04 -1.54e-06 1.77e-04 8.10e-02 -4.94e-05 -8.46e-04 ]
C [ -4.35e-04 1.52e-05 1.85e-06 1.20e-04 5.29e-05 2.89e-06 6.93e-02 3.76e-06 3.58e-03 9.94e-03 ]
G [ 2.86e-03 1.62e-05 5.92e-02 -2.49e-06 3.52e-02 6.95e-06 6.80e-07 3.34e-06 -4.58e-04 -4.03e-04 ]
T [ 1.80e-04 7.18e-02 5.22e-04 -4.92e-05 -6.88e-05 7.03e-02 3.48e-06 -1.12e-07 1.49e-02 -1.72e-04 ]

PFM

       
A [ 67476 2864 4231 153448 13797 705 8914 174879 7916 35176 ]
C [ 44406 2403 2570 5197 29745 708 165114 44 55023 68204 ]
G [ 45580 1403 149197 4595 125031 225 701 338 29907 28532 ]
T [ 17936 168728 19401 12159 6826 173761 670 138 82552 43487 ]

AMP ID: MO000006.1

Best match: MA0605.2

CWM

 
A [ -4.09e-04 1.74e-02 1.36e-07 -2.00e-06 4.36e-02 -2.20e-05 5.38e-03 2.33e-06 7.84e-04 5.32e-02 -2.13e-04 -4.12e-04 ]
C [ -3.20e-04 -1.31e-04 2.12e-05 1.86e-05 9.14e-06 3.89e-02 -1.11e-03 2.22e-04 4.20e-02 1.04e-05 4.18e-03 1.08e-02 ]
G [ 1.14e-02 3.74e-03 3.47e-06 3.94e-02 1.84e-04 2.55e-04 9.21e-03 2.39e-05 4.14e-05 2.07e-05 -4.13e-05 -2.30e-04 ]
T [ -2.36e-04 -8.72e-05 6.19e-02 5.15e-04 5.07e-04 4.18e-05 -4.39e-04 4.46e-02 -7.56e-07 6.10e-05 1.39e-02 -4.14e-04 ]

PFM

       
A [ 17172 37400 14 661 67090 1008 25845 3661 5981 66624 3029 12463 ]
C [ 10016 10406 85 810 37 53923 19454 1380 60921 844 20501 29755 ]
G [ 30094 19714 10 64056 799 9090 18465 1208 1324 1067 12840 10112 ]
T [ 12299 2061 69472 4054 1655 5560 5817 63332 1355 1046 33211 17252 ]

AMP ID: MO000008.1

Best match: MA0605.2

CWM

 
A [ -2.99e-04 -5.99e-04 1.29e-02 2.58e-04 4.27e-05 9.10e-06 1.28e-04 3.26e-02 -8.68e-05 ]
C [ 5.21e-04 1.81e-03 -1.03e-04 3.15e-02 5.05e-05 1.93e-04 2.23e-02 -7.21e-06 4.66e-03 ]
G [ -2.07e-04 4.55e-03 6.05e-03 -2.91e-05 3.56e-02 4.43e-05 1.29e-03 1.33e-04 2.55e-05 ]
T [ 1.46e-02 6.10e-03 -2.81e-05 3.93e-05 8.94e-05 3.10e-02 1.45e-07 -4.70e-06 8.12e-03 ]

PFM

       
A [ 1240 709 5297 164 11 78 423 9825 187 ]
C [ 1960 2067 389 9461 4 111 8716 12 4031 ]
G [ 1091 3510 3018 88 9882 29 575 53 1354 ]
T [ 5606 3610 1193 184 0 9679 183 7 4326 ]

AMP ID: MO000011.1

Best match: UN0799.1

CWM

 
A [ 1.90e-03 5.41e-03 7.46e-04 9.67e-04 1.60e-02 9.37e-04 4.97e-04 6.14e-04 1.48e-04 -6.68e-04 1.21e-05 -2.54e-04 -2.10e-04 -2.66e-05 -3.57e-04 -2.37e-04 1.79e-04 1.04e-04 6.68e-04 -7.39e-04 -4.02e-04 1.09e-02 -1.41e-06 5.52e-05 3.13e-02 1.21e-04 4.52e-05 5.20e-03 1.55e-02 4.77e-05 ]
C [ 1.82e-02 2.01e-03 1.39e-03 1.38e-02 1.88e-03 5.59e-03 1.82e-03 1.02e-03 2.88e-03 9.40e-04 1.28e-03 7.53e-04 7.43e-04 1.46e-03 1.01e-03 9.73e-04 8.84e-04 1.30e-03 7.54e-04 7.70e-04 3.33e-04 1.15e-04 6.34e-05 1.30e-05 9.85e-05 2.72e-02 -1.51e-04 1.86e-03 1.80e-04 5.00e-04 ]
G [ 1.80e-03 4.69e-03 1.17e-03 9.97e-04 7.96e-04 7.06e-04 7.61e-04 1.07e-03 5.18e-04 8.06e-04 8.73e-04 6.47e-04 7.82e-04 8.40e-04 7.02e-04 2.27e-03 9.40e-04 1.17e-03 1.33e-03 1.78e-03 6.98e-03 2.05e-03 0.00e+00 3.73e-02 7.02e-07 7.47e-05 2.09e-04 7.56e-05 2.24e-04 4.59e-03 ]
T [ 1.06e-03 1.06e-03 1.33e-02 6.90e-04 5.38e-04 1.81e-03 1.14e-04 1.25e-04 7.60e-05 1.12e-04 -1.66e-04 1.67e-04 2.65e-04 -2.69e-04 -2.15e-04 -2.67e-04 -1.77e-04 -4.64e-04 -1.35e-03 1.62e-03 -2.67e-04 -4.41e-05 3.51e-02 1.05e-04 5.08e-06 1.28e-05 1.24e-02 2.34e-05 -1.59e-04 3.35e-03 ]

PFM

       
A [ 907 1160 959 932 1235 976 1017 1001 938 1118 1050 1015 1072 969 1171 992 1034 1105 1232 1009 844 3007 0 0 3705 0 803 2156 2552 723 ]
C [ 1029 720 873 1084 728 1001 876 791 985 769 869 799 871 922 752 703 972 956 703 550 379 88 0 0 0 3691 191 451 346 392 ]
G [ 840 885 755 749 809 818 775 920 775 877 815 787 825 810 809 1035 827 920 861 1194 2023 608 0 3705 0 2 299 399 448 1513 ]
T [ 929 940 1118 940 933 910 1037 993 1007 941 971 1104 937 1004 973 975 872 724 909 952 459 2 3705 0 0 12 2412 699 359 1077 ]

AMP ID: MO000007.1

Best match: MA0605.2

CWM

 
A [ 1.53e-02 2.92e-04 0.00e+00 5.75e-04 2.97e-05 3.86e-02 1.14e-05 2.61e-06 4.55e-02 -3.09e-05 -1.93e-04 ]
C [ -3.21e-04 -3.63e-05 1.71e-04 2.20e-05 5.19e-02 -1.09e-04 0.00e+00 5.23e-02 0.00e+00 1.62e-03 1.22e-02 ]
G [ 4.56e-03 0.00e+00 3.59e-02 6.19e-04 4.09e-05 1.77e-04 -3.04e-06 0.00e+00 2.01e-05 3.70e-04 2.25e-04 ]
T [ -1.72e-04 3.34e-02 1.75e-03 2.52e-02 1.72e-05 3.65e-06 4.94e-02 0.00e+00 0.00e+00 1.78e-02 -5.25e-04 ]

PFM

       
A [ 4619 1400 555 506 355 9753 123 186 9230 381 1609 ]
C [ 1712 750 307 69 9137 38 61 9633 127 2323 4534 ]
G [ 1969 323 7286 110 187 144 96 78 121 1633 1427 ]
T [ 1639 7466 1791 9254 260 4 9659 42 461 5602 2369 ]

AMP ID: MO000009.1

Best match: MA0605.2

CWM

 
A [ -1.06e-04 -2.44e-04 -1.22e-05 7.44e-05 2.22e-04 8.86e-05 -1.09e-04 -1.89e-04 1.44e-03 7.95e-05 5.80e-04 8.24e-03 3.78e-04 6.51e-04 2.12e-04 1.52e-03 1.51e-02 5.20e-04 ]
C [ 1.99e-03 1.72e-03 2.66e-03 7.39e-04 1.33e-03 1.35e-03 4.09e-03 4.71e-04 1.07e-04 1.14e-04 1.64e-04 2.14e-05 1.00e-02 -7.12e-05 1.18e-04 2.21e-03 -8.58e-05 1.78e-03 ]
G [ 1.88e-03 2.42e-03 1.54e-03 2.48e-03 1.07e-03 1.99e-03 8.40e-04 6.07e-03 1.99e-03 1.92e-04 1.61e-03 8.20e-04 -1.83e-04 1.06e-02 -8.73e-05 -1.38e-04 9.98e-05 -2.37e-04 ]
T [ -1.91e-04 -3.24e-05 -5.13e-05 -1.61e-04 -2.10e-04 -3.16e-04 -1.57e-04 -3.16e-05 2.78e-05 1.20e-02 2.07e-03 2.22e-04 1.35e-04 4.05e-04 1.15e-02 1.28e-03 4.10e-04 2.69e-03 ]

PFM

       
A [ 231 237 211 205 208 210 236 176 279 33 105 670 3 14 31 273 1093 95 ]
C [ 313 365 321 318 320 327 424 140 300 31 107 58 1079 0 36 591 0 423 ]
G [ 329 288 337 325 318 372 236 568 375 8 501 247 0 1082 13 75 0 197 ]
T [ 224 207 228 249 251 188 201 213 143 1025 384 122 15 1 1017 158 4 382 ]

8 models found for ATF3

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000206.1 ATF3 ENCSR028UIU K562 Homo sapiens
BP000693.1 ATF3 ENCSR205FOW liver Homo sapiens
BP000810.1 ATF3 ENCSR632DCH K562 Homo sapiens
BP000842.1 ATF3 ENCSR402ZCY HepG2 Homo sapiens
BP000943.1 ATF3 ENCSR000BNU K562 Homo sapiens
BP001043.1 ATF3 ENCSR000BUG HCT116 Homo sapiens
BP001064.1 ATF3 ENCSR568ZXG K562 Homo sapiens
BP001223.1 ATF3 ENCSR480LIS liver Homo sapiens
Showing 8 profiles of page 1 from 1 pages
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