This page shows the summary of all deep learning-derived profiles and motifs for CTCF. Please scroll down the page to browse individual datasets.
Profile summary
| Name: | CTCF |
| Profile ID: | DL0020.1 |
| Class: | C2H2 zinc finger factors |
| Family: | More than 3 adjacent zinc fingers |
| Taxon: | Vertebrates |
| Species: | Homo sapiens |
| Data Type: | ChIP-seq |
| Uniprot ID: | P49711 |
| Source: | ENCODE |
| Number of Datasets: | 439 |
| Models: | BPNet |
Primary motif pattern (PMP) ID: MO000039.1
Best match: MA0139.2
| A [ | -2.59e-03 | -2.31e-03 | -1.33e-03 | -7.14e-04 | -1.19e-04 | -1.21e-04 | -1.41e-03 | -4.06e-03 | -4.79e-03 | 3.89e-03 | -1.65e-03 | -7.83e-04 | 2.49e-02 | -1.51e-03 | -4.48e-03 | 7.05e-02 | -2.55e-04 | 1.52e-02 | -3.77e-03 | -7.99e-04 | -1.52e-03 | -2.81e-03 | 7.61e-03 | -2.68e-03 | -2.41e-03 | 8.74e-03 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 1.90e-02 | 9.96e-03 | 5.86e-03 | 4.37e-03 | 1.37e-03 | 6.35e-05 | 2.67e-03 | 1.22e-02 | 5.36e-03 | -1.57e-03 | 8.76e-02 | 1.63e-01 | 2.92e-04 | 5.70e-02 | 1.54e-02 | -1.56e-04 | 1.13e-04 | 1.57e-04 | 1.04e-04 | 1.60e-04 | 1.26e-03 | 8.09e-02 | 3.54e-04 | 2.87e-02 | 9.96e-03 | 4.12e-03 | ] |
| G [ | -2.28e-03 | -1.06e-03 | -2.00e-04 | -5.07e-04 | 7.19e-04 | -1.20e-04 | 1.40e-03 | -1.74e-03 | 9.27e-03 | 1.89e-02 | -1.51e-03 | -2.53e-04 | 6.37e-03 | 1.17e-02 | -1.55e-03 | 1.54e-03 | 1.66e-01 | 6.88e-02 | 5.19e-02 | 1.54e-01 | 9.91e-02 | 2.20e-04 | 4.99e-02 | 1.06e-02 | -9.77e-04 | 5.33e-03 | ] |
| T [ | -1.19e-04 | -3.02e-04 | -1.37e-03 | -8.82e-04 | -2.54e-04 | 2.20e-03 | 1.77e-04 | 5.96e-03 | -2.60e-03 | -4.53e-03 | -2.57e-03 | -6.29e-04 | -5.05e-03 | -1.84e-03 | 1.79e-02 | -2.01e-03 | -2.84e-04 | -4.59e-04 | 5.22e-03 | -5.76e-04 | -5.69e-04 | -2.90e-03 | -3.61e-03 | -9.07e-04 | 1.23e-02 | -3.14e-03 | ] |
| A [ | 3424314 | 3845403 | 4506752 | 4733690 | 4807130 | 4930995 | 4271208 | 2660547 | 3974896 | 5147025 | 1757126 | 225205 | 12704476 | 1153627 | 2981073 | 15690326 | 127279 | 7024567 | 1302181 | 256175 | 633239 | 2952986 | 7464380 | 2062559 | 2822959 | 6588696 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 7881945 | 6777911 | 6123108 | 5613773 | 5136666 | 4403085 | 4882075 | 6250995 | 4070895 | 2185478 | 14937239 | 18706457 | 904340 | 10674291 | 7630175 | 579370 | 29567 | 182155 | 781460 | 116127 | 939620 | 13587113 | 1266569 | 9140065 | 6484463 | 4711229 | ] |
| G [ | 3129394 | 3538093 | 4283166 | 4495660 | 4345004 | 4002126 | 4995556 | 2887793 | 6686794 | 8303591 | 1195609 | 72773 | 2639422 | 6633034 | 1637673 | 1593306 | 18843667 | 11638147 | 10525842 | 18478143 | 15929944 | 822245 | 9187520 | 5787957 | 2344058 | 5535697 | ] |
| T [ | 4637084 | 4911330 | 4159711 | 4229614 | 4783936 | 5736532 | 4923898 | 7273403 | 4340152 | 3436644 | 1182763 | 68302 | 2824499 | 611785 | 6823816 | 1209735 | 72223 | 227867 | 6463254 | 222291 | 1569935 | 1710393 | 1154269 | 2082156 | 7421257 | 2237115 | ] |
Alternative motif patterns (AMPs)
AMP ID: MO000040.1
Best match: MA0139.2
| A [ | 1.90e-02 | -2.38e-04 | -7.40e-05 | -5.91e-03 | -1.20e-04 | -1.29e-04 | 1.65e-03 | -4.10e-05 | -4.88e-05 | -7.33e-04 | 1.16e-02 | -1.20e-03 | -9.67e-04 | -7.74e-03 | -1.25e-03 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | -8.72e-05 | 1.55e-03 | 9.86e-02 | -8.10e-04 | 9.55e-02 | 1.17e-01 | 4.13e-02 | 7.52e-02 | 1.11e-01 | 2.72e-04 | -4.37e-04 | 3.73e-03 | 3.55e-02 | -3.62e-03 | -2.36e-03 | ] |
| G [ | 4.70e-03 | 5.09e-02 | 7.38e-05 | 2.74e-02 | 4.83e-05 | 6.13e-05 | 9.29e-05 | 9.08e-08 | -1.19e-05 | -2.57e-05 | 1.45e-02 | 3.27e-02 | 9.43e-04 | 1.27e-03 | 4.14e-02 | ] |
| T [ | -1.05e-03 | -1.02e-03 | 1.01e-03 | -8.22e-03 | -1.52e-04 | -7.12e-05 | -2.22e-03 | 1.78e-03 | -2.76e-05 | 5.80e-02 | -2.13e-03 | -1.09e-03 | 3.01e-04 | -1.50e-02 | -1.90e-03 | ] |
| A [ | 75675 | 5610 | 501 | 18006 | 2177 | 398 | 35281 | 1286 | 649 | 9596 | 40238 | 5962 | 19723 | 13064 | 15481 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 12493 | 9932 | 136868 | 3527 | 140238 | 143255 | 85919 | 109621 | 142136 | 10786 | 21195 | 52335 | 69237 | 18371 | 22404 | ] |
| G [ | 40667 | 123481 | 500 | 85664 | 1436 | 285 | 10510 | 1687 | 522 | 6472 | 63169 | 63120 | 22092 | 72844 | 83641 | ] |
| T [ | 15845 | 5658 | 6811 | 37483 | 829 | 742 | 12970 | 32086 | 1373 | 117826 | 20078 | 23262 | 33628 | 40401 | 23154 | ] |
AMP ID: MO000041.1
Best match: MA0139.2
| A [ | 1.20e-02 | -1.18e-03 | -4.80e-04 | -1.95e-04 | -4.06e-04 | -2.02e-04 | 1.77e-03 | -8.55e-04 | -6.57e-04 | -1.37e-03 | 1.05e-02 | -2.05e-03 | -2.43e-03 | -1.04e-02 | -1.81e-03 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 7.06e-04 | 7.48e-03 | 1.05e-01 | 2.89e-04 | 1.06e-01 | 1.29e-01 | 3.87e-02 | 3.18e-02 | 1.11e-01 | 2.39e-03 | 1.84e-03 | 6.09e-03 | 3.00e-02 | -1.65e-03 | 1.67e-03 | ] |
| G [ | 1.75e-02 | 5.55e-02 | 3.23e-04 | 1.16e-01 | 4.65e-04 | 4.55e-04 | 6.67e-04 | 4.77e-04 | 3.07e-04 | 9.06e-04 | 1.46e-02 | 3.32e-02 | 6.92e-03 | 1.38e-02 | 3.88e-02 | ] |
| T [ | -1.94e-03 | -9.98e-04 | 1.58e-03 | -5.13e-04 | -2.80e-04 | -2.60e-04 | -3.31e-03 | 1.63e-02 | -6.95e-04 | 4.77e-02 | -3.13e-03 | -1.99e-03 | -4.23e-04 | -1.34e-02 | -4.90e-03 | ] |
| A [ | 12568 | 1302 | 66 | 298 | 727 | 107 | 7726 | 475 | 847 | 3903 | 5118 | 2394 | 3956 | 2242 | 3513 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 2236 | 2982 | 25325 | 34 | 26261 | 26958 | 12480 | 20200 | 23926 | 6088 | 7922 | 11048 | 9646 | 5143 | 7793 | ] |
| G [ | 9982 | 22131 | 43 | 26728 | 261 | 133 | 3880 | 571 | 1176 | 3534 | 9724 | 9485 | 7673 | 15513 | 11296 | ] |
| T [ | 2667 | 1037 | 2019 | 393 | 204 | 255 | 3368 | 6208 | 1503 | 13928 | 4689 | 4526 | 6177 | 4555 | 4851 | ] |
AMP ID: MO000042.1
Best match: MA1929.1
| A [ | -1.27e-03 | -2.24e-04 | -9.33e-05 | 3.27e-02 | 6.21e-03 | -7.75e-04 | 2.59e-03 | -1.17e-03 | -2.16e-03 | -1.17e-03 | -8.02e-04 | -7.62e-04 | -8.61e-04 | -1.71e-03 | -3.87e-03 | -4.41e-03 | 1.38e-03 | -1.32e-03 | -1.91e-03 | 7.50e-03 | 6.55e-04 | -3.71e-03 | 2.96e-02 | 2.30e-03 | 4.38e-03 | -3.68e-03 | -1.70e-03 | -2.20e-03 | -3.78e-03 | 2.60e-03 | -1.30e-03 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | -7.74e-05 | 5.40e-04 | 4.81e-02 | -6.54e-04 | -1.29e-03 | -5.29e-04 | -1.34e-03 | 4.76e-02 | 2.91e-02 | 5.30e-03 | 7.14e-03 | 3.75e-03 | 1.64e-03 | 2.66e-03 | 1.08e-02 | 5.05e-03 | -8.54e-04 | 5.23e-02 | 1.12e-01 | 1.25e-02 | 2.89e-02 | 1.34e-02 | 6.10e-04 | -5.33e-05 | -2.50e-04 | 4.45e-04 | 5.37e-04 | 3.16e-03 | 4.12e-02 | 9.34e-03 | 1.74e-02 | ] |
| G [ | 1.42e-03 | 7.30e-02 | -4.53e-05 | 1.37e-04 | 8.80e-03 | -5.75e-04 | 5.25e-04 | -7.36e-04 | -6.46e-04 | 8.20e-04 | 3.44e-04 | 1.10e-03 | 8.49e-04 | 9.30e-04 | -6.92e-04 | 6.78e-03 | 1.78e-02 | 2.48e-04 | -1.78e-03 | 8.02e-03 | 8.65e-03 | -1.45e-04 | 4.32e-03 | 9.55e-02 | 7.14e-02 | 4.23e-02 | 9.37e-02 | 6.80e-02 | 8.68e-03 | 2.64e-02 | 1.03e-02 | ] |
| T [ | 2.94e-02 | -3.04e-04 | 3.54e-03 | -2.07e-03 | -9.97e-04 | 5.84e-02 | 8.31e-03 | -1.03e-03 | -8.17e-04 | -1.66e-03 | -1.36e-03 | -6.78e-04 | 7.22e-04 | 8.79e-05 | 3.30e-03 | -1.40e-03 | -3.42e-03 | -3.43e-03 | -2.29e-03 | -5.96e-03 | -3.94e-03 | 8.45e-03 | -1.73e-03 | -1.69e-03 | -1.07e-03 | 6.93e-04 | -1.21e-03 | -9.06e-04 | -1.90e-03 | -3.00e-03 | -1.12e-03 | ] |
| A [ | 3196 | 1288 | 1577 | 17365 | 8119 | 1172 | 6029 | 2001 | 3253 | 7134 | 6347 | 6361 | 7028 | 6248 | 3475 | 5805 | 6389 | 3293 | 637 | 15673 | 2431 | 5118 | 18173 | 1005 | 5335 | 2740 | 1016 | 1721 | 5278 | 10054 | 3593 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 2687 | 1198 | 19122 | 2841 | 4318 | 1993 | 3186 | 19448 | 15603 | 8230 | 8076 | 7970 | 6147 | 6952 | 9534 | 5357 | 2724 | 19182 | 25453 | 1903 | 12620 | 10545 | 1152 | 204 | 282 | 1360 | 717 | 2771 | 15467 | 3382 | 10343 | ] |
| G [ | 3536 | 22647 | 757 | 2600 | 10519 | 1240 | 5933 | 1285 | 1609 | 5029 | 6725 | 5909 | 5869 | 6787 | 3706 | 9069 | 12977 | 2128 | 193 | 3899 | 9914 | 2961 | 4340 | 24747 | 20409 | 14658 | 23670 | 19354 | 2597 | 10604 | 8669 | ] |
| T [ | 17042 | 1328 | 5005 | 3654 | 3505 | 22056 | 11312 | 3727 | 5997 | 6068 | 5313 | 6221 | 7417 | 6474 | 9746 | 6229 | 4371 | 1858 | 178 | 4986 | 1496 | 7837 | 2796 | 505 | 435 | 7703 | 1058 | 2615 | 3119 | 2420 | 3856 | ] |
AMP ID: MO000043.1
Best match: MA1930.2
| A [ | -7.03e-04 | 3.59e-05 | -1.29e-04 | 3.57e-02 | 7.79e-03 | -2.58e-04 | 3.75e-03 | 1.97e-05 | -1.65e-03 | -5.28e-04 | -7.41e-04 | -8.97e-06 | 5.67e-05 | 2.28e-04 | -1.37e-03 | -2.81e-03 | -1.75e-03 | 2.95e-03 | -1.36e-03 | -2.25e-03 | 1.24e-02 | -6.78e-04 | 7.75e-05 | 2.42e-02 | 1.15e-03 | 2.64e-03 | -4.46e-03 | -1.52e-03 | -1.94e-03 | -9.37e-04 | 3.06e-03 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 2.68e-05 | 1.75e-06 | 4.39e-02 | -8.94e-05 | -9.89e-04 | -1.90e-04 | -1.18e-03 | 1.84e-02 | 3.19e-02 | 4.79e-03 | 6.84e-03 | 2.95e-03 | 1.46e-03 | 6.30e-04 | 3.84e-03 | 7.16e-03 | 2.58e-03 | 3.93e-04 | 6.16e-02 | 8.20e-02 | 3.06e-03 | 2.55e-02 | 6.31e-03 | -8.29e-05 | -1.59e-05 | 3.17e-04 | 2.80e-04 | 3.89e-04 | 5.73e-03 | 2.91e-02 | 6.06e-03 | ] |
| G [ | 9.12e-06 | 7.73e-02 | -2.38e-05 | -4.30e-04 | 1.20e-02 | -2.89e-04 | 8.24e-04 | -1.42e-03 | -1.23e-03 | 6.74e-05 | -9.60e-05 | -1.56e-06 | 5.13e-04 | -3.12e-04 | 2.27e-04 | -9.07e-04 | 7.59e-03 | 1.08e-02 | -1.22e-03 | -3.55e-04 | 7.32e-03 | 5.48e-03 | -1.08e-03 | 8.49e-03 | 8.87e-02 | 5.72e-02 | 3.26e-02 | 7.18e-02 | 4.30e-02 | 5.06e-03 | 1.99e-02 | ] |
| T [ | 3.48e-02 | -6.56e-05 | 4.78e-03 | -7.92e-04 | -1.04e-03 | 5.29e-02 | 1.12e-02 | -1.00e-04 | -4.47e-04 | -1.09e-03 | -9.35e-04 | -5.38e-04 | 7.63e-04 | 2.58e-03 | 1.53e-03 | 4.65e-03 | -1.96e-03 | -3.26e-03 | -2.42e-03 | -1.33e-03 | -3.79e-03 | -2.39e-03 | 9.68e-03 | -2.19e-03 | -1.11e-03 | -1.39e-03 | 4.82e-04 | -1.36e-03 | -8.53e-04 | -1.34e-03 | -2.68e-03 | ] |
| A [ | 581 | 44 | 186 | 7011 | 2697 | 290 | 2117 | 1892 | 1366 | 2456 | 2029 | 2123 | 2197 | 2222 | 1882 | 1381 | 1848 | 2457 | 605 | 237 | 6025 | 644 | 1937 | 5998 | 240 | 1812 | 1075 | 545 | 1002 | 2019 | 3034 | ] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C [ | 455 | 14 | 6847 | 560 | 1120 | 568 | 434 | 4213 | 5086 | 2700 | 3113 | 2625 | 2039 | 2138 | 2557 | 2707 | 1710 | 1036 | 7537 | 8416 | 316 | 4538 | 2911 | 324 | 46 | 89 | 502 | 372 | 1180 | 4089 | 1407 | ] |
| G [ | 432 | 8691 | 32 | 423 | 4329 | 346 | 2357 | 1196 | 748 | 1454 | 2018 | 2033 | 1855 | 1641 | 1873 | 1096 | 3169 | 3830 | 289 | 34 | 1021 | 3104 | 849 | 1625 | 8377 | 6683 | 4275 | 7233 | 5461 | 1117 | 3224 | ] |
| T [ | 7310 | 29 | 1713 | 784 | 632 | 7574 | 3870 | 1477 | 1578 | 2168 | 1618 | 1997 | 2687 | 2777 | 2466 | 3594 | 2051 | 1455 | 347 | 91 | 1416 | 492 | 3081 | 831 | 115 | 194 | 2926 | 628 | 1135 | 1553 | 1113 | ] |