Summary information of deep learning profile DL0029.1

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This page shows the summary of all deep learning-derived profiles and motifs for EGR1. Please scroll down the page to browse individual datasets.

Profile summary

Name: EGR1
Profile ID: DL0029.1
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P18146  
Source: ENCODE
Number of Datasets: 11
Models: BPNet

Sequence logo

Contribution weight matrix (CWM)

 
A [ 1.33e-03 -2.52e-04 1.19e-03 -2.54e-07 1.79e-07 -2.42e-05 1.55e-02 -2.12e-06 -6.92e-04 -2.53e-04 ]
C [ 1.53e-02 4.60e-02 2.88e-05 6.65e-02 5.17e-02 4.45e-02 8.78e-03 6.58e-02 -8.94e-06 2.48e-02 ]
G [ -2.50e-04 -7.43e-05 2.44e-02 1.25e-05 1.66e-05 9.41e-06 1.37e-05 8.37e-06 2.42e-02 -2.26e-04 ]
T [ -5.93e-04 -2.69e-04 -1.14e-03 9.96e-07 1.06e-05 2.70e-04 -5.23e-05 -8.41e-06 -1.18e-03 -7.04e-05 ]

Frequency matrix

       
A [ 109361 22957 151053 941 11759 7415 259475 1428 143116 48198 ]
C [ 493636 662184 52865 729295 693553 634110 368063 724966 133639 474332 ]
G [ 77329 19628 390794 5147 20195 25762 72902 3746 317757 114961 ]
T [ 56137 31695 141751 1080 10956 69176 36023 6323 141951 98971 ]

Alternative motif patterns (AMPs)

AMP ID: MO000054.1

Best match: MA0162.2

CWM

 
A [ -8.01e-05 7.15e-04 -9.71e-05 -2.15e-04 -1.54e-04 4.96e-05 -5.86e-05 -2.86e-04 -2.94e-05 -4.05e-05 -2.20e-05 5.14e-04 -9.84e-05 -5.92e-04 -7.40e-05 -2.35e-05 -3.78e-04 -2.03e-04 -3.05e-04 -1.66e-04 -1.61e-04 -2.92e-04 -4.10e-04 -2.64e-04 -1.06e-04 -2.52e-04 8.83e-06 -3.05e-04 -1.54e-04 -4.00e-05 1.03e-05 -1.58e-04 -1.61e-04 -1.51e-04 ]
C [ 9.18e-03 3.04e-03 8.29e-03 1.15e-02 2.87e-03 1.35e-02 2.02e-02 2.48e-03 2.31e-02 2.17e-02 1.01e-02 1.37e-02 2.30e-02 3.92e-03 1.25e-02 1.06e-02 2.52e-03 6.36e-03 7.49e-03 2.43e-03 4.46e-03 5.18e-03 1.88e-03 3.82e-03 4.99e-03 2.44e-03 4.76e-03 6.38e-03 3.28e-03 5.74e-03 6.07e-03 3.97e-03 5.87e-03 7.25e-03 ]
G [ 7.91e-05 2.88e-04 4.47e-04 1.55e-04 2.76e-04 1.26e-04 5.27e-05 2.49e-03 9.30e-05 9.86e-05 8.10e-04 2.70e-04 2.56e-05 2.52e-03 4.97e-04 2.90e-04 1.35e-03 7.33e-04 6.58e-04 1.29e-03 7.29e-04 7.25e-04 9.79e-04 9.05e-04 1.33e-03 1.03e-03 1.80e-03 2.02e-03 2.31e-03 9.66e-04 2.38e-03 3.39e-03 2.15e-03 1.37e-03 ]
T [ -3.19e-04 -1.60e-03 -2.70e-04 -2.32e-04 -1.58e-03 3.50e-05 -8.06e-05 -2.53e-03 -1.11e-05 -1.44e-04 -1.85e-03 -7.33e-05 -2.34e-04 -2.51e-03 -3.04e-04 -3.52e-04 -1.33e-03 -3.60e-04 -3.82e-04 -1.32e-03 -5.89e-04 -3.76e-04 -1.09e-03 -3.12e-04 -1.35e-04 -8.24e-04 -2.15e-04 -2.66e-04 -9.35e-04 1.53e-04 -3.90e-04 -1.18e-03 -5.44e-04 -3.52e-04 ]

PFM

       
A [ 2 21 8 3 12 2 1 17 0 0 2 1 0 19 5 14 25 9 15 34 21 33 24 23 35 29 18 31 33 26 28 43 30 42 ]
C [ 260 54 254 277 43 288 290 16 291 291 75 286 290 34 278 250 54 241 208 64 197 173 89 187 187 92 179 185 87 187 187 88 167 169 ]
G [ 11 52 18 3 56 0 0 65 0 0 10 2 0 46 4 11 52 15 20 46 41 30 57 39 28 58 52 27 65 36 42 63 57 33 ]
T [ 18 164 11 8 180 1 0 193 0 0 204 2 1 192 4 16 160 26 48 147 32 55 121 42 41 112 42 48 106 42 34 97 37 47 ]

11 models found for EGR1

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000330.1 EGR1 ENCSR024CNP K562 Homo sapiens
BP000348.1 EGR1 ENCSR000BMQ GM12878 Homo sapiens
BP000440.1 EGR1 ENCSR000BRZ HCT116 Homo sapiens
BP000470.1 EGR1 ENCSR026GSW HepG2 Homo sapiens
BP000507.1 EGR1 ENCSR211LTF K562 Homo sapiens
BP000628.1 EGR1 ENCSR736BUG liver Homo sapiens
BP000635.1 EGR1 ENCSR000BUX MCF-7 Homo sapiens
BP000770.1 EGR1 ENCSR000BNE K562 Homo sapiens
BP000794.1 EGR1 ENCSR000BJA H1 Homo sapiens
BP001030.1 EGR1 ENCSR290ZOS liver Homo sapiens
Showing 10 profiles of page 1 from 2 pages