Summary information of deep learning profile DL0047.1

This page shows the summary of all deep learning-derived profiles and motifs for FOXA2. Please scroll down the page to browse individual datasets.

Profile summary

Name: FOXA2
Profile ID: DL0047.1
Class: Fork head/winged helix factors
Family: FOX
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q9Y261  
Source: ENCODE
Number of Datasets: 6
Models: BPNet

Sequence logo

Contribution weight matrix (CWM)

A [ 4.85e-03 1.39e-02 5.60e-03 1.67e-03 -2.70e-05 5.36e-02 6.15e-02 8.37e-02 4.95e-07 6.03e-02 ]
C [ -3.81e-04 -9.93e-04 -1.32e-04 -3.06e-05 1.57e-03 8.58e-03 1.27e-03 2.97e-06 4.53e-02 -5.26e-05 ]
G [ -6.43e-04 7.07e-03 -6.76e-04 5.72e-02 4.29e-06 6.07e-06 7.84e-07 -6.66e-06 -4.40e-05 -1.67e-05 ]
T [ 1.63e-02 -1.38e-03 1.15e-02 8.80e-06 7.63e-02 2.11e-06 -3.08e-05 -7.72e-06 1.96e-02 -2.13e-04 ]

Frequency matrix

A [ 156844 191986 165589 68960 3866 310231 370584 419295 2445 384419 ]
C [ 49377 62530 12251 7096 19898 103693 47061 1347 298483 8407 ]
G [ 34276 110897 80940 326036 1542 4442 3675 2538 3549 9939 ]
T [ 185487 60573 167206 23893 400679 7618 4665 2805 121508 23220 ]

Alternative motif patterns (AMPs)

AMP ID: MO000082.1

Best match: MA0047.3

A [ 3.08e-04 -8.66e-04 4.46e-03 1.31e-02 8.48e-03 5.99e-03 -1.35e-04 5.88e-02 5.34e-02 5.88e-02 4.46e-06 4.41e-02 ]
C [ 5.11e-03 6.00e-03 -3.82e-05 -3.05e-04 -7.31e-05 -1.42e-04 2.92e-02 7.76e-05 3.98e-05 7.63e-06 2.97e-02 -3.81e-06 ]
G [ 3.54e-03 5.67e-04 -1.30e-04 6.00e-03 7.47e-05 1.79e-02 -9.09e-06 6.08e-08 8.09e-06 -2.46e-06 1.69e-05 -4.38e-09 ]
T [ -1.18e-03 1.92e-03 1.38e-02 -4.84e-04 3.70e-03 -1.17e-04 1.37e-03 1.24e-05 1.43e-07 2.96e-06 1.37e-02 -5.87e-05 ]
A [ 74524 76022 113718 128489 125867 107784 17672 251794 248829 256791 4748 244530 ]
C [ 71674 79500 26058 31330 19194 18035 204565 5331 8495 76 184390 2629 ]
G [ 62132 41427 17330 67842 51810 100137 4621 29 64 349 5250 3633 ]
T [ 49366 60746 100590 30035 60825 31740 30838 542 308 480 63308 6904 ]

AMP ID: MO000083.1

Best match: MA0032.2

A [ 6.27e-04 -4.50e-04 2.73e-02 4.90e-02 5.22e-02 1.95e-06 7.03e-02 -7.24e-06 1.20e-06 2.81e-06 2.73e-02 -2.32e-04 ]
C [ -2.39e-04 1.97e-02 6.98e-03 1.54e-04 1.61e-05 2.50e-04 -3.02e-06 -1.52e-05 -1.20e-06 1.39e-06 5.49e-05 3.11e-02 ]
G [ 1.83e-02 3.75e-04 -3.97e-07 1.38e-06 -1.26e-05 5.72e-06 2.25e-04 2.00e-06 9.43e-05 4.22e-03 2.18e-02 -1.96e-04 ]
T [ -6.15e-04 1.85e-02 -4.60e-05 -1.53e-05 -3.94e-05 7.27e-02 0.00e+00 6.73e-02 6.31e-02 4.51e-02 -7.33e-05 1.43e-03 ]
A [ 7300 1302 14614 19362 19393 76 21733 34 22 306 12591 1966 ]
C [ 2185 9834 4941 992 609 207 9 16 9 7 131 12402 ]
G [ 8219 1172 724 530 495 10 148 23 150 3574 8899 828 ]
T [ 4204 9600 1629 1024 1411 21615 18 21835 21727 18021 287 6712 ]

6 models found for FOXA2

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000298.1 FOXA2 ENCSR066EBK HepG2 Homo sapiens
BP000704.1 FOXA2 ENCSR310NYI liver Homo sapiens
BP000787.1 FOXA2 ENCSR080XEY liver Homo sapiens
BP000906.1 FOXA2 ENCSR000BNI HepG2 Homo sapiens
BP001055.1 FOXA2 ENCSR490AMH HepG2 Homo sapiens
BP001115.1 FOXA2 ENCSR000BRE A549 Homo sapiens
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