Summary information of deep learning profile DL0055.1

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This page shows the summary of all deep learning-derived profiles and motifs for GATA2. Please scroll down the page to browse individual datasets.

Profile summary

Name: GATA2
Profile ID: DL0055.1
Class: Other C4 zinc finger-type factors
Family: C4-GATA-related
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P23769  
Source: ENCODE
Number of Datasets: 7
Models: BPNet

Sequence logo

Contribution weight matrix (CWM)

 
A [ -3.66e-04 -2.42e-04 1.23e-04 2.20e-03 -2.59e-04 -6.31e-04 3.40e-04 4.95e-04 -9.34e-04 1.03e-02 2.32e-05 6.39e-02 -4.30e-06 2.75e-02 1.77e-02 -1.30e-03 4.84e-03 -3.85e-04 -1.28e-04 1.87e-03 4.10e-03 -2.96e-04 ]
C [ 1.29e-03 1.77e-03 1.41e-03 1.01e-03 1.33e-03 1.51e-03 6.14e-04 2.33e-04 5.00e-03 2.16e-04 1.60e-05 5.39e-05 6.57e-05 2.89e-04 -2.89e-04 3.09e-03 1.63e-03 1.24e-03 5.17e-03 1.21e-03 1.30e-03 3.40e-03 ]
G [ 5.42e-03 3.96e-03 3.77e-03 1.98e-03 1.33e-03 1.83e-03 1.35e-03 1.95e-03 2.11e-03 -1.91e-04 6.78e-02 1.60e-05 6.55e-05 2.15e-04 5.73e-04 7.19e-03 2.54e-03 1.24e-03 7.75e-04 2.09e-03 1.14e-03 1.46e-03 ]
T [ 3.64e-03 3.90e-04 4.66e-05 4.52e-04 2.84e-03 -2.12e-04 -3.22e-04 -1.07e-04 -8.32e-04 1.99e-03 3.85e-05 6.92e-06 7.03e-02 -7.63e-05 -2.09e-04 -6.80e-04 -9.62e-04 3.66e-03 9.15e-04 1.22e-03 1.47e-03 3.87e-03 ]

Frequency matrix

       
A [ 195186 200509 209110 219497 208768 228489 221566 243339 170259 462895 12528 760755 78 425236 396783 197859 277362 252069 215713 222698 229897 225783 ]
C [ 142546 152047 151530 159323 156452 149975 156360 141805 263541 31166 1767 905 1623 67792 70157 172259 141406 136950 178480 172562 153562 150639 ]
G [ 200433 206479 201751 180774 185043 188392 181845 186524 195931 26480 748636 318 209 85427 159193 238913 196355 174165 166913 171003 167476 174990 ]
T [ 225786 204917 201561 204358 213689 197096 204181 192284 134221 243411 1022 1974 762042 185497 137819 154921 148829 200767 202845 197688 213017 212540 ]

Alternative motif patterns (AMPs)

AMP ID: MO000096.1

Best match: MA0036.1

CWM

 
A [ 1.38e-02 5.34e-06 9.40e-02 5.55e-06 2.31e-02 1.58e-02 -1.36e-03 1.84e-03 6.42e-02 -9.09e-06 1.55e-04 ]
C [ 1.73e-04 2.95e-07 0.00e+00 -2.78e-06 8.50e-04 -7.21e-04 3.75e-03 1.40e-04 -1.20e-05 2.82e-05 5.97e-02 ]
G [ -4.72e-04 9.39e-02 8.64e-06 3.11e-06 -3.89e-04 9.30e-04 1.82e-03 5.19e-03 4.10e-05 3.15e-05 -1.76e-05 ]
T [ 3.97e-03 5.28e-05 -5.51e-07 1.01e-01 1.31e-03 -5.50e-04 2.13e-04 5.03e-04 2.69e-05 6.12e-02 3.30e-05 ]

PFM

       
A [ 12703 331 21558 2 10137 9742 6365 7999 21284 295 283 ]
C [ 814 30 9 95 2852 2534 4628 4885 44 65 19973 ]
G [ 619 21240 1 0 2359 4585 5409 4934 242 116 334 ]
T [ 7495 30 63 21534 6283 4771 5229 3812 61 21155 1042 ]

AMP ID: MO000098.1

Best match: MA0036.2

CWM

 
A [ -3.05e-05 4.46e-02 0.00e+00 1.92e-02 2.13e-02 -6.17e-05 2.50e-02 -1.81e-04 1.16e-02 ]
C [ 0.00e+00 -1.44e-05 -1.04e-05 2.28e-04 -5.04e-05 1.38e-04 1.93e-04 7.50e-05 3.66e-04 ]
G [ 5.98e-02 0.00e+00 0.00e+00 -2.84e-04 -1.53e-04 4.44e-02 1.52e-04 1.99e-05 1.37e-04 ]
T [ 0.00e+00 -2.38e-05 4.90e-02 -3.47e-04 -2.99e-04 -3.45e-05 -2.74e-04 2.60e-02 -7.05e-04 ]

PFM

       
A [ 0 2187 1 1382 2036 4 1645 388 1104 ]
C [ 0 3 67 130 11 9 332 254 228 ]
G [ 2231 5 3 151 20 2213 119 172 370 ]
T [ 0 36 2160 568 164 5 135 1417 529 ]

AMP ID: MO000097.1

Best match: MA0036.2

CWM

 
A [ 1.60e-02 -3.88e-05 2.91e-02 0.00e+00 2.49e-02 3.90e-02 2.26e-02 8.93e-05 1.71e-02 ]
C [ -6.60e-05 3.75e-05 0.00e+00 0.00e+00 2.27e-04 0.00e+00 0.00e+00 2.42e-02 0.00e+00 ]
G [ 0.00e+00 3.66e-02 6.15e-04 0.00e+00 0.00e+00 0.00e+00 0.00e+00 0.00e+00 9.98e-05 ]
T [ 1.62e-04 9.68e-05 0.00e+00 5.02e-02 -2.78e-05 0.00e+00 2.19e-04 3.11e-04 4.89e-05 ]

PFM

       
A [ 2084 127 2101 0 1940 2831 2436 376 1811 ]
C [ 91 23 30 3 421 7 76 1960 228 ]
G [ 162 2633 190 0 64 0 104 152 276 ]
T [ 501 55 517 2835 413 0 222 350 523 ]

AMP ID: MO000099.1

Best match: MA0036.4

CWM

 
A [ -1.36e-04 -4.81e-04 -7.57e-04 -1.66e-04 -6.96e-04 -1.43e-03 -5.75e-05 -4.35e-04 -2.72e-04 2.80e-03 0.00e+00 3.23e-02 0.00e+00 3.93e-02 5.39e-05 0.00e+00 ]
C [ 2.91e-05 1.35e-03 9.27e-04 8.93e-05 6.50e-04 7.22e-04 1.08e-04 8.76e-05 3.19e-03 9.36e-05 1.35e-04 0.00e+00 0.00e+00 0.00e+00 0.00e+00 3.03e-02 ]
G [ 1.39e-02 1.76e-03 7.93e-04 2.40e-03 9.05e-04 -1.21e-04 9.62e-04 1.31e-03 1.02e-03 1.73e-05 4.12e-02 0.00e+00 0.00e+00 0.00e+00 -1.43e-05 0.00e+00 ]
T [ -2.02e-04 -5.04e-04 2.11e-04 -3.64e-04 -5.48e-04 -2.42e-04 -8.85e-04 -2.36e-04 -7.93e-04 2.96e-03 0.00e+00 6.13e-04 4.77e-02 0.00e+00 1.77e-02 0.00e+00 ]

PFM

       
A [ 340 356 348 401 363 442 417 419 361 787 2 1355 0 1571 376 26 ]
C [ 260 364 311 371 394 412 333 326 484 119 8 32 5 6 33 1509 ]
G [ 535 533 460 461 371 388 388 470 451 122 1570 7 4 6 261 44 ]
T [ 449 331 465 351 456 342 446 369 288 556 4 190 1575 1 914 5 ]

7 models found for GATA2

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000483.1 GATA2 ENCSR000EYB SH-SY5Y Homo sapiens
BP000642.1 GATA2 ENCSR257RKC K562 Homo sapiens
BP000745.1 GATA2 ENCSR897LDT HepG2 Homo sapiens
BP000755.1 GATA2 ENCSR000EWG K562 Homo sapiens
BP000812.1 GATA2 ENCSR706VOO SK-N-SH Homo sapiens
BP001047.1 GATA2 ENCSR000DKA K562 Homo sapiens
BP001194.1 GATA2 ENCSR000BKM K562 Homo sapiens
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