Summary information of deep learning profile DL0104.1

This page shows the summary of all deep learning-derived profiles and motifs for NFIB. Please scroll down the page to browse individual datasets.

Profile summary

Name: NFIB
Profile ID: DL0104.1
Class: SMAD/NF-1 DNA-binding domain factors
Family: Nuclear factor 1
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: O00712  
Source: ENCODE
Number of Datasets: 3
Models: BPNet

Sequence logo

Contribution weight matrix (CWM)

A [ -7.00e-04 -1.13e-04 -1.45e-06 -1.71e-06 1.58e-04 8.36e-03 -1.21e-03 -1.18e-03 -1.34e-03 -4.07e-04 -7.43e-05 -1.71e-05 -1.12e-06 6.77e-02 3.66e-02 ]
C [ 1.32e-02 -8.22e-06 1.63e-07 1.07e-06 8.61e-02 -4.54e-04 3.12e-03 1.70e-03 9.52e-04 -9.96e-05 -1.47e-04 1.13e-01 1.22e-01 -1.57e-05 -6.24e-04 ]
G [ -6.62e-04 -4.51e-05 1.25e-01 1.19e-01 -4.06e-05 -2.10e-05 9.63e-04 7.95e-03 8.73e-03 -3.76e-03 5.67e-02 2.98e-06 2.11e-06 -9.12e-06 5.32e-03 ]
T [ 2.37e-02 7.16e-02 -9.69e-08 -4.14e-06 -2.41e-05 -6.42e-04 4.11e-04 -1.03e-03 -9.81e-04 5.90e-03 -1.13e-03 -7.57e-07 -8.44e-07 -1.90e-04 -6.45e-04 ]

Frequency matrix

A [ 5928 1450 56 476 6000 49607 18267 26713 26277 31339 791 363 223 95974 49367 ]
C [ 46907 700 82 105 99855 20576 35859 26127 25189 5354 1613 105614 106458 8187 4835 ]
G [ 4684 7073 106622 106072 695 4740 25740 27230 37336 21538 93904 181 125 905 46487 ]
T [ 49375 97671 134 241 344 31971 27027 26823 18092 48663 10586 736 88 1828 6206 ]

Alternative motif patterns (AMPs)

AMP ID: MO000180.1

Best match: MA1643.1

A [ -4.49e-04 -2.08e-04 1.84e-03 2.73e-03 1.57e-04 -5.17e-04 -3.08e-04 -5.19e-04 -9.58e-05 5.14e-05 6.45e-05 8.60e-06 2.61e-02 2.48e-02 3.53e-03 1.54e-03 8.90e-05 5.25e-03 6.02e-03 6.59e-03 -1.83e-04 ]
C [ 1.85e-04 9.11e-04 2.40e-04 1.76e-03 2.13e-03 3.30e-03 1.71e-03 2.37e-03 9.73e-05 -1.44e-05 4.22e-02 4.88e-02 5.99e-05 5.58e-05 3.82e-04 4.86e-04 1.72e-03 1.36e-03 8.27e-04 7.35e-04 6.61e-03 ]
G [ 1.17e-03 2.73e-02 1.04e-02 -2.12e-04 -2.37e-04 3.05e-03 1.98e-03 2.13e-03 1.60e-04 3.95e-02 3.35e-04 0.00e+00 -2.88e-06 1.10e-04 1.56e-03 1.49e-03 2.25e-04 9.10e-04 7.28e-04 3.05e-04 7.23e-04 ]
T [ 6.59e-03 -1.02e-04 -6.82e-05 -5.86e-04 1.11e-03 -3.74e-04 -5.74e-04 5.27e-04 7.47e-03 1.48e-04 -2.22e-07 0.00e+00 -1.56e-05 -8.17e-06 -3.05e-04 3.34e-04 3.28e-03 -1.59e-04 2.00e-06 9.91e-04 1.39e-03 ]
A [ 1749 998 2865 4801 3422 1888 2548 2230 2718 11 18 5 10694 8569 3694 3535 3098 3071 3175 3324 2767 ]
C [ 1065 1132 829 2928 3130 4155 3498 3646 589 13 11357 11492 416 213 2001 2333 2523 3184 2956 2839 3229 ]
G [ 3107 8594 6239 2131 1614 2576 2482 3063 1161 11334 48 1 149 2396 4129 2306 2910 2538 2442 2630 2677 ]
T [ 5577 774 1565 1638 3332 2880 2970 2559 7030 140 75 0 239 319 1674 3324 2966 2705 2925 2705 2826 ]

3 models found for NFIB

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000219.1 NFIB ENCSR414WBQ HepG2 Homo sapiens
BP000409.1 NFIB ENCSR702BYX MCF-7 Homo sapiens
BP000888.1 NFIB ENCSR582ZOA MCF-7 Homo sapiens
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