Summary information of deep learning profile DL0143.1

This page shows the summary of all deep learning-derived profiles and motifs for SOX13. Please scroll down the page to browse individual datasets.

Profile summary

Name: SOX13
Profile ID: DL0143.1
Class: High-mobility group (HMG) domain factors
Family: SOX-related factors
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q9UN79  
Source: ENCODE
Number of Datasets: 1
Models: BPNet

Sequence logo

Contribution weight matrix (CWM)

A [ 1.52e-02 3.04e-03 2.67e-02 2.02e-02 6.24e-03 2.33e-03 2.11e-03 6.57e-04 -9.37e-04 -1.80e-04 -2.67e-04 1.65e-02 1.85e-06 0.00e+00 4.26e-05 3.93e-04 -3.79e-04 -5.58e-04 ]
C [ 2.11e-03 1.97e-02 1.83e-03 9.60e-04 8.20e-04 1.88e-03 1.14e-03 1.03e-03 4.57e-03 1.92e-02 2.47e-02 -2.53e-05 1.54e-06 0.00e+00 6.76e-06 6.36e-06 1.33e-03 1.04e-02 ]
G [ 1.23e-03 1.17e-03 5.29e-04 8.31e-04 1.23e-03 9.01e-03 6.75e-03 5.75e-03 2.46e-03 9.47e-04 7.76e-05 3.83e-05 -1.57e-05 0.00e+00 7.53e-02 -1.53e-07 -1.33e-04 -8.54e-05 ]
T [ 1.20e-03 2.74e-04 2.05e-05 -1.72e-04 3.54e-03 -3.79e-04 -7.88e-04 -1.01e-03 4.41e-04 9.22e-04 3.58e-03 1.09e-02 6.00e-02 7.61e-02 0.00e+00 5.22e-02 1.72e-02 4.79e-03 ]

Frequency matrix

A [ 24702 23993 27673 28229 24516 22077 22219 20001 14996 6993 6699 31304 553 5 289 5072 8044 13699 ]
C [ 18185 20322 18631 17206 16543 17132 17780 16855 19514 33565 44928 3511 1664 1 56 1291 17415 21553 ]
G [ 16861 16097 16104 16000 18650 20996 19886 20751 21674 18066 6959 2729 959 0 81420 586 15265 9849 ]
T [ 22029 21366 19369 20342 22067 21571 21892 24170 25593 23153 23191 44233 78601 81771 12 74829 41053 36676 ]

1 models found for SOX13

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000587.1 SOX13 ENCSR715UCI HepG2 Homo sapiens
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