Summary information of deep learning profile DL0149.1

This page shows the summary of all deep learning-derived profiles and motifs for SRF. Please scroll down the page to browse individual datasets.

Profile summary

Name: SRF
Profile ID: DL0149.1
Class: MADS box factors
Family: Responders to external signals (SRF/RLM1)
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P11831  
Source: ENCODE
Number of Datasets: 11
Models: BPNet

Sequence logo

Contribution weight matrix (CWM)

A [ -1.08e-04 1.04e-06 6.93e-03 8.13e-04 3.53e-02 2.27e-04 2.06e-02 2.28e-03 9.33e-04 -3.19e-04 ]
C [ 8.66e-02 9.24e-02 -1.52e-03 -2.16e-04 -6.44e-04 -2.98e-04 -4.00e-04 4.71e-05 1.52e-05 -6.86e-05 ]
G [ -4.61e-05 1.17e-05 1.11e-05 -8.68e-05 -9.49e-04 -6.97e-05 -5.73e-04 -4.50e-04 7.93e-02 8.28e-02 ]
T [ -1.03e-04 2.38e-04 9.76e-03 4.21e-02 3.09e-03 5.32e-02 1.01e-02 2.07e-02 -6.71e-06 -2.02e-04 ]

Frequency matrix

A [ 2667 61 43740 17788 63048 9692 52459 33909 10284 2848 ]
C [ 103221 105448 10000 4688 5014 4703 8028 3711 222 2098 ]
G [ 1803 86 3527 5562 9560 1591 6530 10004 98418 100593 ]
T [ 1723 3819 52147 81376 31792 93428 42397 61790 490 3875 ]

11 models found for SRF

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP001076.1 SRF ENCSR000BTD Ishikawa Homo sapiens
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