Summary information of deep learning profile DL0149.1

This page shows the summary of all deep learning-derived profiles and motifs for SRF. Please scroll down the page to browse individual datasets.

Profile summary

Name: SRF
Profile ID: DL0149.1
Class: MADS box factors
Family: Responders to external signals (SRF/RLM1)
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P11831  
Source: ENCODE
Number of Datasets: 11
Models: BPNet

Sequence logo

Contribution weight matrix (CWM)

A [ -1.08e-04 1.04e-06 6.93e-03 8.13e-04 3.53e-02 2.27e-04 2.06e-02 2.28e-03 9.33e-04 -3.19e-04 ]
C [ 8.66e-02 9.24e-02 -1.52e-03 -2.16e-04 -6.44e-04 -2.98e-04 -4.00e-04 4.71e-05 1.52e-05 -6.86e-05 ]
G [ -4.61e-05 1.17e-05 1.11e-05 -8.68e-05 -9.49e-04 -6.97e-05 -5.73e-04 -4.50e-04 7.93e-02 8.28e-02 ]
T [ -1.03e-04 2.38e-04 9.76e-03 4.21e-02 3.09e-03 5.32e-02 1.01e-02 2.07e-02 -6.71e-06 -2.02e-04 ]

Frequency matrix

A [ 2667 61 43740 17788 63048 9692 52459 33909 10284 2848 ]
C [ 103221 105448 10000 4688 5014 4703 8028 3711 222 2098 ]
G [ 1803 86 3527 5562 9560 1591 6530 10004 98418 100593 ]
T [ 1723 3819 52147 81376 31792 93428 42397 61790 490 3875 ]

11 models found for SRF

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000211.1 SRF ENCSR000BMI GM12878 Homo sapiens
BP000300.1 SRF ENCSR000BGE GM12878 Homo sapiens
BP000428.1 SRF ENCSR000BVA MCF-7 Homo sapiens
BP000510.1 SRF ENCSR000BLV HepG2 Homo sapiens
BP000629.1 SRF ENCSR000BLK K562 Homo sapiens
BP000878.1 SRF ENCSR516SMM HepG2 Homo sapiens
BP000898.1 SRF ENCSR000BSC HCT116 Homo sapiens
BP000900.1 SRF ENCSR582IAO K562 Homo sapiens
BP000905.1 SRF ENCSR041XML GM12878 Homo sapiens
BP000920.1 SRF ENCSR000BIV H1 Homo sapiens
Showing 10 profiles of page 1 from 2 pages