Summary information of deep learning profile DL0149.1

This page shows the summary of all deep learning-derived profiles and motifs for SRF. Please scroll down the page to browse individual datasets.

Profile summary

Name: SRF
Profile ID: DL0149.1
Class: MADS box factors
Family: Responders to external signals (SRF/RLM1)
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P11831  
Source: ENCODE
Number of Datasets: 11
Models: BPNet

Sequence logo

Contribution weight matrix (CWM)

A [ -2.02e-04 -6.71e-06 2.07e-02 1.01e-02 5.32e-02 3.09e-03 4.21e-02 9.76e-03 2.38e-04 -1.03e-04 ]
C [ 8.28e-02 7.93e-02 -4.50e-04 -5.73e-04 -6.97e-05 -9.49e-04 -8.68e-05 1.11e-05 1.17e-05 -4.61e-05 ]
G [ -6.86e-05 1.52e-05 4.71e-05 -4.00e-04 -2.98e-04 -6.44e-04 -2.16e-04 -1.52e-03 9.24e-02 8.66e-02 ]
T [ -3.19e-04 9.33e-04 2.28e-03 2.06e-02 2.27e-04 3.53e-02 8.13e-04 6.93e-03 1.04e-06 -1.08e-04 ]

Frequency matrix

A [ 3875 490 61790 42397 93428 31792 81376 52147 3819 1723 ]
C [ 100593 98418 10004 6530 1591 9560 5562 3527 86 1803 ]
G [ 2098 222 3711 8028 4703 5014 4688 10000 105448 103221 ]
T [ 2848 10284 33909 52459 9692 63048 17788 43740 61 2667 ]

11 models found for SRF

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP000211.1 SRF ENCSR000BMI GM12878 Homo sapiens
BP000300.1 SRF ENCSR000BGE GM12878 Homo sapiens
BP000428.1 SRF ENCSR000BVA MCF-7 Homo sapiens
BP000510.1 SRF ENCSR000BLV HepG2 Homo sapiens
BP000629.1 SRF ENCSR000BLK K562 Homo sapiens
BP000878.1 SRF ENCSR516SMM HepG2 Homo sapiens
BP000898.1 SRF ENCSR000BSC HCT116 Homo sapiens
BP000900.1 SRF ENCSR582IAO K562 Homo sapiens
BP000905.1 SRF ENCSR041XML GM12878 Homo sapiens
BP000920.1 SRF ENCSR000BIV H1 Homo sapiens
Showing 10 profiles of page 1 from 2 pages