Summary information of deep learning profile DL0169.1

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This page shows the summary of all deep learning-derived profiles and motifs for USF1. Please scroll down the page to browse individual datasets.

Profile summary

Name: USF1
Profile ID: DL0169.1
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P22415  
Source: ENCODE
Number of Datasets: 14
Models: BPNet

Sequence logo

Contribution weight matrix (CWM)

 
A [ 3.59e-03 -2.22e-03 -1.27e-05 8.22e-02 -2.46e-05 6.16e-04 -2.10e-05 3.96e-06 4.01e-02 -5.23e-04 ]
C [ -2.52e-04 3.81e-03 1.29e-01 -2.43e-04 6.19e-02 3.46e-04 3.24e-05 2.40e-05 -5.25e-04 4.16e-02 ]
G [ 1.91e-02 -9.29e-04 1.52e-05 1.57e-04 1.98e-04 9.56e-02 -1.12e-05 1.34e-01 9.86e-04 -4.05e-04 ]
T [ -2.32e-03 1.15e-02 -4.19e-06 -3.37e-04 6.66e-03 -1.19e-05 9.85e-02 -2.27e-06 -7.94e-04 3.44e-03 ]

Frequency matrix

       
A [ 130796 55114 3625 443752 3129 33252 5035 215 263579 26556 ]
C [ 92819 168829 489574 15161 308563 23798 7789 611 69952 286058 ]
G [ 226362 90292 843 15843 44286 436763 4817 492266 122540 66701 ]
T [ 44531 180274 468 19753 138531 696 476868 1417 38439 115193 ]

Alternative motif patterns (AMPs)

AMP ID: MO000273.1

Best match: MA0093.2

CWM

 
A [ 5.47e-03 -7.80e-04 8.61e-06 3.76e-02 1.15e-05 6.28e-05 2.88e-06 6.79e-06 3.26e-02 -1.05e-05 ]
C [ -8.41e-04 9.65e-04 6.25e-02 2.32e-06 6.02e-04 2.24e-02 4.48e-05 1.22e-05 4.05e-05 3.30e-02 ]
G [ 1.16e-02 -3.95e-04 2.46e-05 1.05e-04 2.18e-02 7.03e-04 6.42e-06 6.68e-02 1.16e-04 5.41e-05 ]
T [ -4.45e-04 1.70e-02 -1.11e-05 -6.14e-05 3.24e-05 3.04e-05 4.40e-02 2.31e-05 -3.99e-05 1.31e-03 ]

PFM

       
A [ 7836 2650 101 19572 718 4996 399 2 21574 97 ]
C [ 4063 7014 24261 1274 6160 15662 295 1 1049 21159 ]
G [ 10336 4718 37 1001 13230 3137 202 24406 1289 296 ]
T [ 2179 10032 15 2567 4306 620 23518 5 502 2862 ]

AMP ID: MO000274.1

Best match: MA0093.1

CWM

 
A [ -2.73e-04 2.21e-04 -2.08e-03 4.51e-05 5.30e-02 2.01e-04 2.12e-03 -1.83e-04 -3.43e-05 3.08e-03 2.70e-04 1.50e-04 -1.06e-04 8.87e-02 0.00e+00 0.00e+00 0.00e+00 0.00e+00 1.87e-02 -1.99e-04 ]
C [ 1.09e-02 8.71e-05 1.18e-04 7.23e-02 8.01e-04 4.74e-02 6.75e-04 1.20e-03 7.01e-04 6.88e-04 5.85e-03 2.76e-03 1.21e-01 -2.63e-04 9.68e-02 0.00e+00 0.00e+00 0.00e+00 -9.35e-05 3.61e-02 ]
G [ 1.34e-02 4.54e-02 -3.77e-05 1.33e-02 6.75e-04 4.74e-04 4.07e-02 6.11e-04 6.41e-02 5.19e-03 3.23e-02 1.49e-04 0.00e+00 0.00e+00 0.00e+00 9.80e-02 0.00e+00 1.26e-01 2.16e-04 0.00e+00 ]
T [ 4.38e-03 0.00e+00 3.13e-02 6.04e-04 -3.58e-04 1.45e-03 -5.92e-05 4.20e-02 -2.05e-04 2.85e-04 -1.43e-03 2.96e-02 0.00e+00 -1.04e-04 0.00e+00 0.00e+00 8.85e-02 0.00e+00 -1.47e-02 3.74e-04 ]

PFM

       
A [ 17 15 14 7 70 8 26 15 6 38 17 11 0 98 0 0 5 0 23 10 ]
C [ 19 11 18 79 8 58 10 16 9 9 19 29 102 1 85 0 2 0 19 59 ]
G [ 57 68 22 11 19 13 58 21 83 42 62 13 0 3 3 102 2 102 19 12 ]
T [ 9 8 48 5 5 23 8 50 4 13 4 49 0 0 14 0 93 0 41 21 ]

14 models found for USF1

Display profiles


Model ID Name Data Source Cell line/tissue Species Sequence logo
BP001029.1 USF1 ENCSR000BGM HepG2 Homo sapiens
BP001031.1 USF1 ENCSR787CHF K562 Homo sapiens
BP001122.1 USF1 ENCSR248QBT WTC11 Homo sapiens
BP001205.1 USF1 ENCSR000BKT K562 Homo sapiens
Showing 4 profiles of page 2 from 2 pages