JASPAR CORE

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Total 4279 profiles

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ID Name Species Class Family Sequence logo
MA0552.2 PIF1 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) bHLH
MA0553.1 SMZ Arabidopsis thaliana AP2/EREBP AP2
MA0554.1 SOC1 Arabidopsis thaliana MADS box factors MIKC
MA0554.2 SOC1 Arabidopsis thaliana MADS box factors Type II
MA0555.1 SVP Arabidopsis thaliana MADS box factors MIKC
MA0555.2 SVP Arabidopsis thaliana MADS box factors Type II
MA0556.1 AP3 Arabidopsis thaliana MADS box factors MIKC
MA0556.2 AP3 Arabidopsis thaliana MADS box factors Type II
MA0557.1 FHY3 Arabidopsis thaliana GCM domain factors WRKY-like_FRS/FRF
MA0557.2 FHY3 Arabidopsis thaliana GCM domain factors FRS/FRF
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.