JASPAR: An open-access database of transcription factor binding profiles

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	ID	Name	Species	Class	Family	Logo

Use the matrix profiles in your cart to perform the following analysis.

Input a (FASTA-formatted) sequence to scan with the matrix models in the cart.

Enter FASTA sequence here: (3000 nucleotides left)

Relative profile score threshold %

Cluster the models in your cart using STAMP tool.

Column comparison metric

Alignment method

Tree-building method

Multiple alignment method

You can use the Newick tree from results to visualize on PhyloTree

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.

Upload your FASTA file:

No. of background sequences to simulate
Length of background sequences to simulate

Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.

Profile Cart