JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0934.1 AHL25 Arabidopsis thaliana A.T hook factors AHL
MA0935.1 NAC025 Arabidopsis thaliana GCM domain factors NAC
MA0936.1 NAC046 Arabidopsis thaliana GCM domain factors NAC
MA0937.1 NAC055 Arabidopsis thaliana GCM domain factors NAC
MA0938.1 NAC058 Arabidopsis thaliana GCM domain factors NAC
MA0938.2 NAC058 Arabidopsis thaliana GCM domain factors NAC
MA0938.3 NAC058 Arabidopsis thaliana GCM domain factors NAC
MA0939.1 NAC079 Arabidopsis thaliana GCM domain factors NAC
MA0940.1 AP1 Arabidopsis thaliana MADS box factors MIKC
MA0941.1 ABF2 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group A
Showing 10 profiles of page 186 from 428 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.