JASPAR CORE

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Total 4279 profiles

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ID Name Species Class Family Sequence logo
MA0941.2 ABF2 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group A
MA0942.1 ARF1 Arabidopsis thaliana B3 ARF
MA0942.2 ARF1 Arabidopsis thaliana B3 ARF
MA0943.1 ARF5 Arabidopsis thaliana B3 ARF
MA0943.2 ARF5 Arabidopsis thaliana B3 ARF
MA0944.1 ARF8 Arabidopsis thaliana B3 ARF
MA0944.2 ARF8 Arabidopsis thaliana B3 ARF
MA0945.1 ARR1 Arabidopsis thaliana Tryptophan cluster factors GARP_ARR-B
MA0945.2 ARR1 Arabidopsis thaliana Tryptophan cluster factors GARP_ARR-B
MA0946.1 ARR11 Arabidopsis thaliana Tryptophan cluster factors GARP_ARR-B
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.