JASPAR CORE

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Total 4279 profiles

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ID Name Species Class Family Sequence logo
MA1289.2 TCP3 Arabidopsis thaliana TCP
MA1290.1 TCP17 Arabidopsis thaliana TCP
MA1291.1 TCP7 Arabidopsis thaliana TCP
MA1292.1 MYB27 Arabidopsis thaliana Tryptophan cluster factors Myb
MA1292.2 MYB27 Arabidopsis thaliana Tryptophan cluster factors MYB
MA1293.1 MYB57 Arabidopsis thaliana Tryptophan cluster factors Myb
MA1293.2 MYB57 Arabidopsis thaliana Tryptophan cluster factors MYB
MA1294.1 MYB62 Arabidopsis thaliana Tryptophan cluster factors Myb
MA1294.2 MYB62 Arabidopsis thaliana Tryptophan cluster factors MYB
MA1295.1 WRKY20 Arabidopsis thaliana GCM domain factors WRKY
Showing 10 profiles of page 251 from 428 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.