JASPAR CORE

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Total 4279 profiles

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ID Name Species Class Family Sequence logo
MA1310.2 WRKY42 Arabidopsis thaliana GCM domain factors WRKY
MA1311.1 WRKY28 Arabidopsis thaliana GCM domain factors WRKY
MA1311.2 WRKY28 Arabidopsis thaliana GCM domain factors WRKY
MA1311.3 WRKY28 Arabidopsis thaliana GCM domain factors WRKY
MA1312.1 WRKY47 Arabidopsis thaliana GCM domain factors WRKY
MA1312.2 WRKY47 Arabidopsis thaliana GCM domain factors WRKY
MA1313.1 WRKY7 Arabidopsis thaliana GCM domain factors WRKY
MA1313.2 WRKY7 Arabidopsis thaliana GCM domain factors WRKY
MA1314.1 WRKY14 Arabidopsis thaliana GCM domain factors WRKY
MA1314.2 WRKY14 Arabidopsis thaliana GCM domain factors WRKY
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.