JASPAR CORE

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Total 4279 profiles

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ID Name Species Class Family Sequence logo
MA1315.1 WRKY24 Arabidopsis thaliana GCM domain factors WRKY
MA1315.2 WRKY24 Arabidopsis thaliana GCM domain factors WRKY
MA1316.1 WRKY71 Arabidopsis thaliana GCM domain factors WRKY
MA1316.2 WRKY71 Arabidopsis thaliana GCM domain factors WRKY
MA1317.1 WRKY50 Arabidopsis thaliana GCM domain factors WRKY
MA1317.2 WRKY50 Arabidopsis thaliana GCM domain factors WRKY
MA1318.1 WRKY27 Arabidopsis thaliana GCM domain factors WRKY
MA1318.2 WRKY27 Arabidopsis thaliana GCM domain factors WRKY
MA1320.1 SPL15 Arabidopsis thaliana C2H2 zinc finger factors SBP
MA1320.2 SPL15 Arabidopsis thaliana C3H(C),C2HC zinc fingers factors SBP
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.