JASPAR CORE

  1. Home
  2. Collection CORE

Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1431.1 rst2 Schizosaccharomyces pombe C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA1431.2 rst2 Schizosaccharomyces pombe C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA1432.1 cre-1 Neurospora crassa C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA1432.2 cre-1 Neurospora crassa C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA1433.1 msn-1 Neurospora crassa C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA1433.2 msn-1 Neurospora crassa C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA1434.1 NCU02182 Neurospora crassa Tryptophan cluster factors Myb/SANT domain factors
MA1435.1 nit-4 Neurospora crassa C6 zinc cluster factors
MA1435.2 nit-4 Neurospora crassa C6 zinc cluster factors
MA1436.1 nuc-1 Neurospora crassa Basic helix-loop-helix factors (bHLH)
Showing 10 profiles of page 277 from 428 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.