JASPAR CORE

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Total 4279 profiles

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ID Name Species Class Family Sequence logo
MA1520.2 MAF Homo sapiens Basic leucine zipper factors (bZIP) Maf-related
MA1521.1 MAFA Homo sapiens Basic leucine zipper factors (bZIP) Maf-related
MA1521.2 MAFA Homo sapiens Basic leucine zipper factors (bZIP) Maf-related
MA1522.1 MAZ Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1522.2 MAZ Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1523.1 MSANTD3 Homo sapiens Tryptophan cluster factors Myb/SANT domain factors
MA1523.2 MSANTD3 Homo sapiens Tryptophan cluster factors Myb/SANT domain factors
MA1524.1 MSGN1 Homo sapiens Basic helix-loop-helix factors (bHLH) Tal-related
MA1524.2 Msgn1 Mus musculus Basic helix-loop-helix factors (bHLH) Tal-related
MA1524.3 Msgn1 Mus musculus Basic helix-loop-helix factors (bHLH) Tal-related
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.