JASPAR CORE

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Total 4279 profiles

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ID Name Species Class Family Sequence logo
MA1660.1 NAC013 Arabidopsis thaliana GCM domain factors NAC
MA1660.2 NAC013 Arabidopsis thaliana GCM domain factors NAC
MA1661.1 GTL1 Arabidopsis thaliana Tryptophan cluster factors Trihelix
MA1661.2 GTL1 Arabidopsis thaliana Tryptophan cluster factors Trihelix
MA1662.1 AT3G10030 Arabidopsis thaliana Tryptophan cluster factors Trihelix
MA1662.2 AT3G10030 Arabidopsis thaliana Tryptophan cluster factors Trihelix
MA1663.1 NAC050 Arabidopsis thaliana GCM domain factors NAC
MA1663.2 NAC050 Arabidopsis thaliana GCM domain factors NAC
MA1663.3 NAC050 Arabidopsis thaliana GCM domain factors NAC
MA1664.1 HSFA6B Arabidopsis thaliana Heat shock factors
Showing 10 profiles of page 315 from 428 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.