JASPAR CORE

  1. Home
  2. Collection CORE

Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1924.1 Tlx Ciona intestinalis Homeo domain factors NK
MA1924.2 Tlx Ciona intestinalis Homeo domain factors NK
MA1925.1 Uncx-b Ciona intestinalis Homeo domain factors Paired-related HD factors
MA1925.2 Uncx-b Ciona intestinalis Homeo domain factors Paired-related HD factors
MA1926.1 Usf Ciona intestinalis Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA1926.2 Usf Ciona intestinalis Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA1927.1 YY1-2 Ciona intestinalis C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1927.2 YY1-2 Ciona intestinalis C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1928.1 BNC2 Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA1928.2 BNC2 Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
Showing 10 profiles of page 364 from 428 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.