JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2105.1 GLYMA-13G317000 Glycine max Basic leucine zipper factors (bZIP) Group A
MA2106.1 Zm00001d024644 Zea mays Tryptophan cluster factors MYB-related
MA2107.1 cg Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2108.1 sqz Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2109.1 Arid3 Ciona intestinalis ARID ARID-related
MA2110.1 Cdx Ciona intestinalis Homeo domain factors HOX
MA2111.1 HNF4 Ciona intestinalis Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA2112.1 Meis Ciona intestinalis Homeo domain factors TALE-type homeo domain factors
MA2113.1 Pax2-5-8-a Ciona intestinalis Paired box factors Paired domain only
MA2114.1 Pax3-7-like Ciona intestinalis Paired box factors Paired plus homeo domain
Showing 10 profiles of page 393 from 458 pages

Analyze selected profiles

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.