JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2155.1 sptf-3 Caenorhabditis elegans C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA2156.1 xbp-1 Caenorhabditis elegans Basic leucine zipper factors (bZIP) XBP-1-related factors
MA2157.1 atfs-1 Caenorhabditis elegans Basic leucine zipper factors (bZIP) ATF-4-related
MA2158.1 ceh-14 Caenorhabditis elegans Homeo domain factors HD-LIM
MA2159.1 ceh-36 Caenorhabditis elegans Homeo domain factors Paired-related HD factors
MA2160.1 ceh-39 Caenorhabditis elegans Homeo domain factors HD-CUT
MA2161.1 ceh-43 Caenorhabditis elegans Homeo domain factors NK
MA2162.1 ceh-60 Caenorhabditis elegans Homeo domain factors TALE-type homeo domain factors
MA2163.1 cnd-1 Caenorhabditis elegans Basic helix-loop-helix factors (bHLH) Tal-related
MA2164.1 egl-27 Caenorhabditis elegans Other C4 zinc finger-type factors C4-GATA-related
Showing 10 profiles of page 398 from 458 pages

Analyze selected profiles

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.