JASPAR CORE

  1. Home
  2. Collection CORE

Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2195.1 ato Drosophila melanogaster Basic helix-loop-helix factors (bHLH) Tal-related
MA2196.1 bigmax Drosophila melanogaster Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA2197.1 bin Drosophila melanogaster Fork head/winged helix factors FOX
MA2198.1 Blimp-1 Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2199.1 bowl Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2200.1 bs Drosophila melanogaster MADS box factors Responders to external signals (SRF/RLM1)
MA2201.1 Bteb2 Drosophila melanogaster C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA2202.1 byn Drosophila melanogaster T-Box factors Brachyury-related factors
MA2203.1 CG12605 Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2204.1 CG4360 Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
Showing 10 profiles of page 402 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.