JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2205.1 CG7928 Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2206.1 CHES-1-like Drosophila melanogaster Fork head/winged helix factors FOX
MA2207.1 ci Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2208.1 crc Drosophila melanogaster Basic leucine zipper factors (bZIP) ATF-4-related factors
MA2209.1 CrebA Drosophila melanogaster Basic leucine zipper factors (bZIP) CREB-related factors
MA2210.1 CrebB Drosophila melanogaster Basic leucine zipper factors (bZIP) CREB-related factors
MA2211.1 croc Drosophila melanogaster Fork head/winged helix factors FOX
MA2212.1 dar1 Drosophila melanogaster C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA2213.1 Dif Drosophila melanogaster Rel homology region (RHR) factors NF-kappaB-related factors
MA2214.1 dimm Drosophila melanogaster Basic helix-loop-helix factors (bHLH) Tal-related
Showing 10 profiles of page 403 from 458 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.