JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0249.2 twi Drosophila melanogaster Basic helix-loop-helix factors (bHLH)
MA0249.3 twi Drosophila melanogaster Basic helix-loop-helix factors (bHLH) Tal-related
MA0250.1 unc-4 Drosophila melanogaster Homeo domain factors Paired-related HD factors
MA0251.1 unpg Drosophila melanogaster Homeo domain factors HOX
MA0252.1 vis Drosophila melanogaster Homeo domain factors
MA0252.2 vis Drosophila melanogaster Homeo domain factors TALE-type homeo domain factors
MA0253.1 vnd Drosophila melanogaster Homeo domain factors NK
MA0254.1 vvl Drosophila melanogaster Homeo domain factors POU domain factors
MA0255.1 z Drosophila melanogaster
MA0255.2 z Drosophila melanogaster
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.