JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0343.2 NDT80 Saccharomyces cerevisiae NDT80 domain factors
MA0344.1 NHP10 Saccharomyces cerevisiae High-mobility group (HMG) domain factors
MA0347.1 NRG1 Saccharomyces cerevisiae C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA0347.2 NRG1 Saccharomyces cerevisiae C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA0347.3 NRG1 Saccharomyces cerevisiae C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA0348.1 OAF1 Saccharomyces cerevisiae C6 zinc cluster factors
MA0348.2 OAF1 Saccharomyces cerevisiae C6 zinc cluster factors
MA0349.1 OPI1 Saccharomyces cerevisiae
MA0349.2 OPI1 Saccharomyces cerevisiae
MA0350.1 TOD6 Saccharomyces cerevisiae Tryptophan cluster factors Myb/SANT domain factors
Showing 10 profiles of page 68 from 428 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.