JASPAR CORE

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Total 4279 profiles

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ID Name Species Class Family Sequence logo
MA0947.1 ARR14 Arabidopsis thaliana Tryptophan cluster factors GARP_ARR-B
MA0948.1 ARR18 Arabidopsis thaliana Tryptophan cluster factors GARP_ARR-B
MA0948.2 ARR18 Arabidopsis thaliana Tryptophan cluster factors GARP_ARR-B
MA0949.1 ARR2 Arabidopsis thaliana Tryptophan cluster factors GARP_ARR-B
MA0949.2 ARR2 Arabidopsis thaliana Tryptophan cluster factors GARP_ARR-B
MA0950.1 ATHB-12 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0951.1 ATHB-16 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0952.1 ATHB-51 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0953.1 ATHB-6 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0953.2 ATHB-6 Arabidopsis thaliana Homeo domain factors HD-ZIP
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.