JASPAR CORE

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Total 4279 profiles

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ID Name Species Class Family Sequence logo
MA1055.3 SPL1 Arabidopsis thaliana C3H(C),C2HC zinc fingers factors SBP
MA1056.1 SPL11 Arabidopsis thaliana C2H2 zinc finger factors SBP
MA1056.2 SPL11 Arabidopsis thaliana C3H(C),C2HC zinc fingers factors SBP
MA1057.1 SPL12 Arabidopsis thaliana C2H2 zinc finger factors SBP
MA1057.2 SPL12 Arabidopsis thaliana C3H(C),C2HC zinc fingers factors SBP
MA1058.1 SPL4 Arabidopsis thaliana C2H2 zinc finger factors SBP
MA1058.2 SPL4 Arabidopsis thaliana C3H(C),C2HC zinc fingers factors SBP
MA1059.1 SPL5 Arabidopsis thaliana C2H2 zinc finger factors SBP
MA1059.2 SPL5 Arabidopsis thaliana C2H2 zinc finger factors SBP
MA1059.3 SPL5 Arabidopsis thaliana C3H(C),C2HC zinc fingers factors SBP
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



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Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.