JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1064.2 TCP2 Arabidopsis thaliana TCP
MA1065.1 TCP20 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) TCP
MA1065.2 TCP20 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) TCP
MA1065.3 TCP20 Arabidopsis thaliana TCP
MA1066.1 TCP23 Arabidopsis thaliana TCP
MA1067.1 TCP5 Arabidopsis thaliana TCP
MA1068.1 TGA2 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group D
MA1068.2 TGA2 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group D
MA1068.3 TGA2 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group D
MA1069.1 TGA6 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group D
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.