JASPAR CORE

  1. Home
  2. Collection core

Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1069.2 TGA6 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group D
MA1069.3 TGA6 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group D
MA1070.1 TGA7 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group D
MA1070.2 TGA7 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group D
MA1070.3 TGA7 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group D
MA1071.1 DOF5.3 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA1071.2 DOF5.3 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA1074.1 UNE10 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
MA1074.2 UNE10 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) bHLH
MA1075.1 WRKY12 Arabidopsis thaliana GCM domain factors WRKY
Showing 10 profiles of page 209 from 428 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.