JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1085.3 WRKY40 Arabidopsis thaliana GCM domain factors WRKY
MA1086.1 WRKY43 Arabidopsis thaliana GCM domain factors WRKY
MA1086.2 WRKY43 Arabidopsis thaliana GCM domain factors WRKY
MA1087.1 WRKY45 Arabidopsis thaliana GCM domain factors WRKY
MA1087.2 WRKY45 Arabidopsis thaliana GCM domain factors WRKY
MA1087.3 WRKY45 Arabidopsis thaliana GCM domain factors WRKY
MA1088.1 WRKY48 Arabidopsis thaliana GCM domain factors WRKY
MA1088.2 WRKY48 Arabidopsis thaliana GCM domain factors WRKY
MA1089.1 WRKY57 Arabidopsis thaliana GCM domain factors WRKY
MA1089.2 WRKY57 Arabidopsis thaliana GCM domain factors WRKY
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.