JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA1212.2 ATHB-13 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA1213.1 ATHB-21 Arabidopsis thaliana Homeo domain factors PLINC
MA1213.2 ZHD3 Arabidopsis thaliana Homeo domain factors PLINC
MA1213.3 ZHD3 Arabidopsis thaliana Homeo domain factors PLINC
MA1214.1 ATHB-40 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA1214.2 ATHB-40 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA1215.1 ATHB-53 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA1215.2 ATHB-53 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA1218.1 DREB1D Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1218.2 DREB1D Arabidopsis thaliana AP2/EREBP ERF/DREB
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Analyze selected profiles

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.