JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1234.2 ERF017 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1235.1 AIL7 Arabidopsis thaliana AP2/EREBP AP2
MA1238.1 ERF038 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1238.2 ERF038 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1238.3 ERF038 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1239.1 ERF104 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1239.2 ERF104 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1240.1 ERF10 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1240.2 ERF077 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1241.1 ERF043 Arabidopsis thaliana AP2/EREBP ERF/DREB
Showing 10 profiles of page 241 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.