JASPAR CORE

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Total 4279 profiles

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ID Name Species Class Family Sequence logo
MA1279.2 DOF1.5 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA1280.1 DOF5.4 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA1280.2 DOF5.4 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA1281.1 DOF5.1 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA1281.2 DOF5.1 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA1282.1 TCP13 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) TCP
MA1282.2 TCP13 Arabidopsis thaliana TCP
MA1283.1 TCP14 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) TCP
MA1283.2 TCP14 Arabidopsis thaliana TCP
MA1284.1 TCP1 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) TCP
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.