JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1368.3 GT-4 Arabidopsis thaliana Tryptophan cluster factors Trihelix
MA1369.1 HDG1 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA1369.2 HDG1 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA1370.1 IDD5 Arabidopsis thaliana C2H2 zinc finger factors
MA1370.2 IDD5 Arabidopsis thaliana C2H2 zinc finger factors IDD
MA1371.1 IDD4 Arabidopsis thaliana C2H2 zinc finger factors
MA1371.2 IDD4 Arabidopsis thaliana C2H2 zinc finger factors IDD
MA1372.1 ZAT10 Arabidopsis thaliana C2H2 zinc finger factors
MA1372.2 ZAT10 Arabidopsis thaliana C2H2 zinc finger factors C2H2
MA1373.1 GAF1 Arabidopsis thaliana C2H2 zinc finger factors IDD
Showing 10 profiles of page 266 from 428 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.