JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1380.1 TCX6 Arabidopsis thaliana CPP
MA1381.1 AT3G46070 Arabidopsis thaliana C2H2 zinc finger factors
MA1381.2 AT3G46070 Arabidopsis thaliana C2H2 zinc finger factors C2H2
MA1382.1 FAR1 Arabidopsis thaliana GCM domain factors WRKY-like_FRS/FRF
MA1382.2 FAR1 Arabidopsis thaliana GCM domain factors FRS/FRF
MA1383.1 KAN2 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA1383.2 KAN2 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA1384.1 PHL7 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA1385.1 AT2G40260 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA1385.2 AT2G40260 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
Showing 10 profiles of page 268 from 428 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.