JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1547.1 PITX2 Homo sapiens Homeo domain factors Paired-related HD factors
MA1547.2 PITX2 Homo sapiens Homeo domain factors Paired-related HD factors
MA1548.1 PLAGL2 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1548.2 PLAGL2 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1549.1 POU6F1 Homo sapiens Homeo domain factors POU domain factors
MA1549.2 POU6F1 Homo sapiens Homeo domain factors POU domain factors
MA1550.1 PPARD Homo sapiens Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA1550.2 PPARD Homo sapiens Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA1552.1 RARB Homo sapiens Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA1552.2 RARB Homo sapiens Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
Showing 10 profiles of page 297 from 428 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.