JASPAR CORE

  1. Home
  2. Collection core

Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1553.1 RARG Homo sapiens Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA1553.2 RARG Homo sapiens Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA1554.1 RFX7 Homo sapiens Fork head/winged helix factors RFX-related factors
MA1554.2 RFX7 Homo sapiens Fork head/winged helix factors RFX-related factors
MA1555.1 RXRB Homo sapiens Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA1556.1 RXRG Homo sapiens Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA1557.1 SMAD5 Homo sapiens SMAD/NF-1 DNA-binding domain factors SMAD factors
MA1558.1 SNAI1 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1558.2 SNAI1 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1559.1 SNAI3 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
Showing 10 profiles of page 298 from 428 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.