JASPAR CORE

  1. Home
  2. Collection core

Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1677.2 NAC078 Arabidopsis thaliana GCM domain factors NAC
MA1678.1 NTL8 Arabidopsis thaliana GCM domain factors NAC
MA1678.2 NTL8 Arabidopsis thaliana GCM domain factors NAC
MA1678.3 NTL8 Arabidopsis thaliana GCM domain factors NAC
MA1679.1 RAP2-1 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1679.2 RAP2-1 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1681.1 SRM1 Arabidopsis thaliana Tryptophan cluster factors Myb-related
MA1681.2 SRM1 Arabidopsis thaliana Tryptophan cluster factors MYB-related
MA1682.1 TCX3 Arabidopsis thaliana CPP
MA1682.2 TCX3 Arabidopsis thaliana CPP
Showing 10 profiles of page 319 from 428 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.